Gene VIBHAR_04933 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_04933 
Symbol 
ID5558174 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand+ 
Start bp198600 
End bp199142 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content40% 
IMG OID640909412 
ProductTRAP-type C4-dicarboxylate transport system permease component 
Protein accessionYP_001447068 
Protein GI156976162 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGATC TGTTACATAA AATGAGTGTT GTGACGGAAA AGCTGGAACG CTTTCTTATC 
ATGATAGCCA TTCTTGCCAT GATGGCGAAT TCTACGGCTA ATGCGATTGG CCGTTATGCT 
TTTAATAAAA GTCTATTTTT TTCTGAAGAG CTCAATCAGT TTTTGATTGT GACGGTGACC 
TTTGTGGGTT TTGCTTACGC GGTAAGGCAG GGTCGCAACA TACGAATGAC GGCAGTCTAT 
GACTCGCTAA GTTTTCGTGC TCAAAAAATC CTCACCACAA TGATCGCGTT GTGCACTGCG 
CTTCTTATGT TCTATCTAGC GTACCAAGGT TTGCTCTATG TTGAAGAGCT TAAATCTATC 
AACCGACTTA GTCCTGCATT GCAGTTTCCA GTTTATTGGG TGTACTCAAT CATTCCTATC 
GGATTTGCGA TTGCTGGTTT GCAATATTCA ATGAGTTTTA TCATGAACTT GCTAAACCCA 
GAGATCTACG TGTCTTTCGA TGTTATTGAA ACGAAAAATA AAGCCAAAGG TGAATTCGAA 
TGA
 
Protein sequence
MKDLLHKMSV VTEKLERFLI MIAILAMMAN STANAIGRYA FNKSLFFSEE LNQFLIVTVT 
FVGFAYAVRQ GRNIRMTAVY DSLSFRAQKI LTTMIALCTA LLMFYLAYQG LLYVEELKSI 
NRLSPALQFP VYWVYSIIPI GFAIAGLQYS MSFIMNLLNP EIYVSFDVIE TKNKAKGEFE