Gene VIBHAR_04926 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_04926 
Symbol 
ID5558224 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand+ 
Start bp192132 
End bp193313 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content48% 
IMG OID640909405 
Productdiaminopropionate ammonia-lyase 
Protein accessionYP_001447061 
Protein GI156976155 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1171] Threonine dehydratase 
TIGRFAM ID[TIGR01747] diaminopropionate ammonia-lyase family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGTTAT TGACGGGTAA ACTGAGCCAC TTCTCCAATC CCTTATCGCG TTCTAGTCTT 
ACGTATTCTG ACGAACAAAG AGAGATTCTT AATCTAGAAG ACGCACGACT AGCGATCGAC 
AGTATTTCTC AATGGCCGGG TTATGTGGCC ACGCCTTTAC ATTCATTAAA ATCAGTCGCG 
GATCAGATCG GCGTTTCGTG CTTCTGTTAC AAGGATGAAT CGCAAAGATT TGGTCTTAAA 
AGTTTTAAAG CATTAGGCGG TGCGTATGCC GTAGCTCGTC AATTACAAGA TGTGATTATG 
CAGCGTTATG GTAAGAAGCC GACGATACAA GCGTTGCTAC AAGGTGAGTG GAAGTCTGAA 
GCTGCTGAAA TCGTGGTGAG CTGCGCCACC GATGGAAATC ATGGACGCTC TGTCGCATGG 
GGAGCGCAAA TGTTTGGCTG CGGGTGCGTC ATTTATATTC ACAAAGATGT TTCCGAGGGT 
CGTAAACAGG CCATGGAAGC CTTCGGTGCA CAAGTTGTCA GAATTTCCGG TAACTATGAT 
GAATCAGTAC GTTTGGCTGA CAGTGAAGCC AAAGTTCATG ATCGTGTGAT TGTCTCTGAC 
ACTTCTTATG AAGGTTACAT GGAGATCCCT AAAGATGTCG CGCTTGGCTA CACTGTGATG 
CTGTCGGAAA TTGTCGAGCA ACTTGATGGG GATATTCCAA CTCATGTGTT CGTGCAAGGT 
GGCGTTGGCG GGTTAGCCTC TGCGGTTTGT GGATACTTCT GGGATCTTTG GGGGGCGCAG 
CGCCCAAGGT TTATTATTGT CGAACCGGAG CAAGCCAATT GTCTGCAGAA AAGCGCGCAA 
GCTGGCAAAC CTGTAGTGGT TGAAGGCGAT TTAGAGACCT TGATGGCCGG TTTGGCTTGT 
GGCGAAGTCT CTACCTTAGC GTGGAGTATT CTTCATAATG GTGCCGATGA CTTTATGACG 
TTGAGTGAAG ATGCCATTCC TCAGGCTATG CGATTTTTGG CCCATGGAGA GAATCGTATC 
GAAGCAGGGG AGTCTGCGGT TCCGGGGTTT GCGGCAGCAG TAATCGCTCG TCAAGATAGT 
GGCTATTCAC AAGCACTTGG TTTGGGGGCA GAAAGTAAGG TACTAGTGAT AGGTACAGAG 
GGGGCAACGG ACCCTGAACT CTACCAACAG TTGGTGAAAT GA
 
Protein sequence
MQLLTGKLSH FSNPLSRSSL TYSDEQREIL NLEDARLAID SISQWPGYVA TPLHSLKSVA 
DQIGVSCFCY KDESQRFGLK SFKALGGAYA VARQLQDVIM QRYGKKPTIQ ALLQGEWKSE 
AAEIVVSCAT DGNHGRSVAW GAQMFGCGCV IYIHKDVSEG RKQAMEAFGA QVVRISGNYD 
ESVRLADSEA KVHDRVIVSD TSYEGYMEIP KDVALGYTVM LSEIVEQLDG DIPTHVFVQG 
GVGGLASAVC GYFWDLWGAQ RPRFIIVEPE QANCLQKSAQ AGKPVVVEGD LETLMAGLAC 
GEVSTLAWSI LHNGADDFMT LSEDAIPQAM RFLAHGENRI EAGESAVPGF AAAVIARQDS 
GYSQALGLGA ESKVLVIGTE GATDPELYQQ LVK