| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_04794 |
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| Symbol | |
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| ID | 5557930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009784 |
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| Strand | + |
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| Start bp | 56518 |
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| End bp | 58980 |
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| Gene Length | 2463 bp |
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| Protein Length | 820 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640909273 |
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| Product | porin PapC |
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| Protein accession | YP_001446930 |
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| Protein GI | 156976024 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCGTC ATTTACTCGG TTTAATAATT GTACTTTCCT TTCCTTCTTT TTCTTACGCG
GCCAGCTTCA ATAATTATTT TATAAGAAGT GAAAATAGTG TCGATTTAAG CAAGTTTTCG
AATGCGAACT TTGTGGAAGA CGGTAAATAT GAGCTAGAGT TTTATATTAA TGGAGAGTTC
TTAACCAAAG AAAATATTGT TTTTAATAAC AATAAGCCCT GCATCTCAGA TGCATTAATG
GACAGTCTTC CTCTAAGCGA ACGAGGGTAT AAAGTCTATA AAGAAAACGC GACATCAGTC
GGTAACGCAG TATGCTACCA ACTTGAAGAA GTTGGCTATA CCAAGGTGGC ATCGGATCTT
GGTAAAGCTC GCTTAGAGAT CACCACGCCT CAAGAATACA TCGCCAATGA GTACAAATAC
GGCTTTGTCC CAGATCGTTT GTGGGATGAT GGTATTGCCG CGCTCTATCT GGATTACAAC
GTTAACTACT TTTCTAGCCA ACAAGACGAT GAAAACGGTT GGAATGATGA TCTATCCACC
TATGGCACTG TGGGGCTAAA TGCTGGAGCG TTTCGCTTCC AAGCAAACTA TCAAGCTTCC
AACAACTATT CGGGTGAATT CACCTCACTG TTTGGCTATG CGCCGATCCG CAGCATTAAG
TCTAAGTTGA CGTTTGGTAA TACTCAGTTT GGTTCGGACG TTTACGACTC GTTCCAGATG
ACGGGCGTAC GCCTGCAAAG CGATGATAAA ATGTTGCCAT CGAACTTGCG TGGCTACTCT
CCGGTGGTTT CTGGCACGGT CAACACCAAT GCTGTGATCA CTATTCGTCA GCAAGGCAAT
GTGCTTAAAG TGGTGAACGT AAATGCAGGC CCGTATCTGA TAGATGATAT CTCACAAGCC
TCTAAAGGTA CGTTGGATGT TGAAGTCAAA CAGGCTGACG GTACGATTCA ACGCTACCAA
GTGAACGGTG CGGACGTCTT GTATCTGACG CGACCAAACC ACCTACGCTA CAGCCTTTCT
GCGGGTGTGC CGGTCAGTGA CTCTTACGAG ATCACGCCAG AGTTCTTTTC TGCAGAAGCG
TCCTATGGTG TGAACAACTA CCTGTCGCTG TTCTCTGCGA CATTGCTGTC TGAAGATTAT
CAATCTTACA CTTTCGGTAG TGGTATCAAC CTTAATTACT TCGGGGCAGC TTCCTTCGAT
ATCTCTACTG CGCAAGCCAA GTTGGGTGAT GACAGTGATG CATCTGGCTT GTCTTATGGT
TTTACCTACA ACAACACCTT GACCGATTTC GGCTTGGGTT TGCGTGTGGC TGGTTACCGT
TTTTCTGAAG AGCAGTACTA CGAATTTGGT GAATATTTAA GGTCCTATGA TGACCACACT
TCGTCCATCA TCTATGCCGC GAACAACAAC CGTAAAGATG AAAAGTACAT CGCGCTGACT
CAAAGTTTTG GTTCAACCAG TGCGTACGTT TCTTACTCCT CAAATAACTA CTGGGACGAT
CGCCGTGACA GTTCTCGTTA CGACATCAAT ATATCGCATC CGTTGAAGAT CAACGGGATC
GACTTGTACT TGACGATGAA TCTCTACCAG TCAAACGACT CTTACCTGAC CTACGAGTCG
GGTATTAATG AGTACTCGCC GAGTATCGAT GAAAAAGGTT GGTCGCTGGG AATTTCTATC
CCTATTGGTG GCAGTAACTC TGTCTCAGTA CAAACCAACT CTCGAGGTGG AGACTACTCT
CAAAGTCTTG CTTACTCGGG CTACAACAAC GTTGACGGTT CGAACTATCG CGTTGCTTAC
GATGTTTATG AAGGTGAATC CAACGGCGTA AGTGGTAACT ACAAACGCGA CTTCTCGTTC
ATGTCGACTT CTGTCGGTGG CAGCTACAAA ACCAATTCAT ACAGCCAAGT GAATGCCAAC
GCGATTGGAT CGGTGTTGCT TTCAAAACAT GGTTTAGCGT ATGGCTCACT TAACTCAGGC
ACGTCGCGCA TTCTTATCGA TTCGAATGTA CCAAACGTCA CCATTAACGG CAGCAACAAC
GAAAAAACCA ATGCGTTTGG CTTGGCGTTG ATTAACGGTG TGACACCTTA TCAAAAGAGC
AACAACAGCA TCGATTACAC ATCACTGCCT GATGATGTTG AGGTGCTTGG AAGCGTGAAA
AGCATGGTGC TGACCGAAGG AGCGATTGGC TATCAAAAAA TTAAAGCACG TCATGGCAGT
AACTTTATGG CGCGCTTGCT AAGCGAACAA GAGATTCCAT TTGGTGCCTT GGTGTTTGAT
GACGAACTTG CTCAAGAGAT CGGCATTGTT GGGCAAGACT CAACGGCTTA TCTGGTCGGC
GTCAATCTCG ATTCACAGAT CAGTGTGAGT TGGGGGGATA ACCAAAGCTG TCACTTAGTC
ATTGATGACT CGATTCTGAA TAGTCAAGAA GTCATCCGTT CCGTTCATTG TGTAACTAAT
TAG
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| Protein sequence | MRRHLLGLII VLSFPSFSYA ASFNNYFIRS ENSVDLSKFS NANFVEDGKY ELEFYINGEF
LTKENIVFNN NKPCISDALM DSLPLSERGY KVYKENATSV GNAVCYQLEE VGYTKVASDL
GKARLEITTP QEYIANEYKY GFVPDRLWDD GIAALYLDYN VNYFSSQQDD ENGWNDDLST
YGTVGLNAGA FRFQANYQAS NNYSGEFTSL FGYAPIRSIK SKLTFGNTQF GSDVYDSFQM
TGVRLQSDDK MLPSNLRGYS PVVSGTVNTN AVITIRQQGN VLKVVNVNAG PYLIDDISQA
SKGTLDVEVK QADGTIQRYQ VNGADVLYLT RPNHLRYSLS AGVPVSDSYE ITPEFFSAEA
SYGVNNYLSL FSATLLSEDY QSYTFGSGIN LNYFGAASFD ISTAQAKLGD DSDASGLSYG
FTYNNTLTDF GLGLRVAGYR FSEEQYYEFG EYLRSYDDHT SSIIYAANNN RKDEKYIALT
QSFGSTSAYV SYSSNNYWDD RRDSSRYDIN ISHPLKINGI DLYLTMNLYQ SNDSYLTYES
GINEYSPSID EKGWSLGISI PIGGSNSVSV QTNSRGGDYS QSLAYSGYNN VDGSNYRVAY
DVYEGESNGV SGNYKRDFSF MSTSVGGSYK TNSYSQVNAN AIGSVLLSKH GLAYGSLNSG
TSRILIDSNV PNVTINGSNN EKTNAFGLAL INGVTPYQKS NNSIDYTSLP DDVEVLGSVK
SMVLTEGAIG YQKIKARHGS NFMARLLSEQ EIPFGALVFD DELAQEIGIV GQDSTAYLVG
VNLDSQISVS WGDNQSCHLV IDDSILNSQE VIRSVHCVTN
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