Gene VIBHAR_03664 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_03664 
Symbol 
ID5554906 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand
Start bp3692802 
End bp3694277 
Gene Length1476 bp 
Protein Length491 aa 
Translation table11 
GC content47% 
IMG OID640909143 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_001446805 
Protein GI156975898 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACCTT CATTACAACT CAAGCTAGGT CAACAGTTAG CCATGACGCC ACAGCTGCAG 
CAAGCGATTC GTTTGTTGCA ATTGTCGACG CTCGATCTTC AACAAGAAAT CCAAGAAGCG
TTGGACTCCA ACCCGCTACT GGAAGTTGAA GAAGGCCACG ATGAGCCTCA AGCAAATGGT
GAAGACAAAT CAGCGTCTGA ATCTGCTGAT AAAAGTGCGA ACGAAGCTAA CGATGCCTCA
GAACCCGACC TTCCAGATAG CTCAGACGTG ATTGAAAAAT CTGAAATCAG CTCTGAGCTA
GAAATTGATA CCACTTGGGA TGACGTATAT AGCGCAAACA CGGGCAGCAC AGGCCTAGCG
CTGGATGATG ACATGCCCGT CTACCAAGGT GAGACCACTG AATCTTTGCA TGATTACCTT
ATGTGGCAGT TAGACTTAAC GCCTTTCAGT GAAACCGACC GCACCATCGC CCTCGCGATT
ATCGATGCGG TCGACGACTA CGGCTACTTA ACCCTATCCC CTGAAGAAAT TCACGAGAGC
TTCGACAACG AAGAAGTGGA ATTGGATGAA GTAGAAGCGG TACGTAAGCG TATTCAGCAA
TTTGACCCGC TCGGTGTAGC CTCTCGCAAT CTGCAAGAAT GCCTACTGCT ACAACTGGCA
ACTTTCCCTG AAGACACGCC GTGGCTTGCT GAGGCGAAAA TGGTGTTGAG CGATCACATC
GACCACCTTG GCAATCGTGA CTACAAGCTG GTCATCAAAG AGGCTAAGCT TAAAGAAGCG
GACTTGCGTG AAGTATTGAA GTTGATTCAA CAACTTGACC CACGTCCAGG TAGTCGTATC
ACACCCGATG ACACTGAATA CGTCATTCCG GATGTGTCCG TATTTAAAGA TCATGGTAAG
TGGACCGTCT CCATAAACCC TGACAGCATT CCGAAACTAA AAGTAAATCA ACAATATGCG
CAACTAGGCA AAGGCAACAG TGCGGATAGC CAGTACATTC GCAGCAATTT GCAAGAGGCA
AAATGGCTGA TTAAGAGCCT AGAAAGCAGA AACGAGACGC TTCTCAAAGT TGCAAGATGT
ATTGTTGAAC ATCAACAAGA TTTCTTCGAG TATGGTGAAG AAGCCATGAA ACCAATGGTG
CTAAACGACG TAGCATTGGA TGTGGACATG CATGAATCGA CAATTTCTCG TGTAACAACA
CAGAAGTTTA TGCATACCCC ACGTGGCATT TTTGAATTGA AGTACTTCTT CTCTAGCCAT
GTTAGTACAG ACAATGGTGG AGAGTGTTCG TCCACAGCAA TTCGCGCACT CATCAAAAAG
TTGGTCGCAG CGGAGAATAC CGCTAAGCCA CTGAGTGATA GCAAAATTGC TGCTCTTCTG
GCTGACCAGG GGATTCAAGT CGCGAGACGG ACGATAGCAA AATATCGTGA ATCCTTGGGT
ATTGCCCCTT CGAGTCAGCG TAAACGCCTA CTTTAG
 
Protein sequence
MKPSLQLKLG QQLAMTPQLQ QAIRLLQLST LDLQQEIQEA LDSNPLLEVE EGHDEPQANG 
EDKSASESAD KSANEANDAS EPDLPDSSDV IEKSEISSEL EIDTTWDDVY SANTGSTGLA
LDDDMPVYQG ETTESLHDYL MWQLDLTPFS ETDRTIALAI IDAVDDYGYL TLSPEEIHES
FDNEEVELDE VEAVRKRIQQ FDPLGVASRN LQECLLLQLA TFPEDTPWLA EAKMVLSDHI
DHLGNRDYKL VIKEAKLKEA DLREVLKLIQ QLDPRPGSRI TPDDTEYVIP DVSVFKDHGK
WTVSINPDSI PKLKVNQQYA QLGKGNSADS QYIRSNLQEA KWLIKSLESR NETLLKVARC
IVEHQQDFFE YGEEAMKPMV LNDVALDVDM HESTISRVTT QKFMHTPRGI FELKYFFSSH
VSTDNGGECS STAIRALIKK LVAAENTAKP LSDSKIAALL ADQGIQVARR TIAKYRESLG
IAPSSQRKRL L