Gene VIBHAR_03542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_03542 
Symbol 
ID5553590 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp3594117 
End bp3594695 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content46% 
IMG OID640909022 
ProductRNA polymerase sigma factor RpoE 
Protein accessionYP_001446705 
Protein GI156975798 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGAGC AGCTGACCGA TCAAGTATTG ATTGAGCGAG TTCAGAATGG CGATAAGCAA 
GCATTCAACC TGCTGGTAAC AAAGTACCAG AACAAGGTAT GTAACCTTAT CTCCAGATAC 
GTAAGTAATC CTGGCGATGT TCCAGATGTA GCACAAGAAG CGTTTATCAA AGCTTACCGA 
GCTATCCCTA GTTTTCGTGG GGAAAGTGCG TTTTACACGT GGCTGTATCG CATTGCTGTG 
AATACTGCGA AAAATCACAT CGTTGCCCAA GGTCGTAGAC CGCCAGCAAC AGACGTGGAT 
GCTGAAGAAG CTGAATTTTA CGAAACAGGT AATGCACTTA AAGAAATTTC GAACCCTGAG 
AACTTAACGT TGTCCAAAGA ATTGCAACGG GTAGTGTTCA GTGCAATCGA AGCCTTACCT 
GAAGATTTAA AAACCGCAAT GACTCTGCGT GAGCTTGATG GCTTAAGCTA CGAGGAAATT 
GCTGAAGTAA TGGATTGCCC GGTGGGAACG GTACGATCGC GTATCTTCCG TGCTCGTGAG 
GCGGTGGAAA AGAAAATCAA ACCTCTTTTG CAGCGCTAG
 
Protein sequence
MNEQLTDQVL IERVQNGDKQ AFNLLVTKYQ NKVCNLISRY VSNPGDVPDV AQEAFIKAYR 
AIPSFRGESA FYTWLYRIAV NTAKNHIVAQ GRRPPATDVD AEEAEFYETG NALKEISNPE 
NLTLSKELQR VVFSAIEALP EDLKTAMTLR ELDGLSYEEI AEVMDCPVGT VRSRIFRARE 
AVEKKIKPLL QR