| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_03529 |
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| Symbol | rumA |
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| ID | 5553374 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009783 |
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| Strand | - |
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| Start bp | 3579652 |
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| End bp | 3580971 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640909009 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001446692 |
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| Protein GI | 156975785 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACGTA TCTTTCAACC TAAAAAGAAA ACGCAATTGA ATACCCGTCA CCAAGCGGTG
CAAGTAGAGC GTTTGGATCA CCACGGCGCA GGCATTGCTT ACCTTAAGAA GAAACCATTA
TTTATTGATG GTGCGCTACC GGGTGAGGAA GTGGTAACCC AATTGGTGGA AGAAAAGAGC
AAGTTCGCTC GCGGTAAGTT GATTAAAATC CTTAAACCGA GTGAAGCTCG CGTGGAGCCA
TTTTGTTCCC ATTACCATGA GTGTGGTGGC TGTGATCTGC AGCATTTGAA CTATGACCAA
CAATTGACGC ACAAGCAGCA AACGCTTCGC CAGTTGATGA GAAAATTTGC CGGCAGTGAT
ATCGAGTTGG GTGCGCCTGT GTTGGGTGAG TCTCTTGGCT ACCGTCGTCG TGCTCGTGTG
AGCTTGTTCG TAGATAAAAA GACTCGTCAG TTGCACTTTG GTTTCCGTAA AAAGCAGAGT
AAGCAAATCG CACAGGTAAC GGATTGCCCA GTGCTTGCAC CTGAGTTAAA TGTGCTATTG
CCAGAGATCT ACTCGACGTT AAAAGCGTTT AAGAAGCCAG AGCAACTTGG TCACGTAGAG
TTGGTGCTAG GTGATAATGC TCCATGCATT ACATTGCGTC ACCTAAACAA GCTGACTGAA
AAAGAAACCA ATACCTTGGT GGAATTGGCG AAGCGTCACC AGGCATCGCT CTATCTGATG
CCTGAAACGG ATCAGCTTGA TTTGGTTGAG GGCGAAGTGC CTTTCTATCA AGAAGCCGGT
GTTACTGTAC CATTTACGCC GAATAACTTT ATTCAAGTGA ACCAAGCGGT AAACCAGAAA
ATGGTTGCTC AGGCTGTGGA TTGGTTAGAC CCAAAAAGTG ACGAGCGAGT ATTAGATTTG
TTCTGTGGCT TGGGTAACTT CAGTTTGCCT ATCGCGAAAC GTGCAAAACA CGTAGTTGGC
GTAGAAGGTG TGGCAGAAAT GGTGGAAAAG GCAGTAAACA ATGCATCTTT GAACCAAATC
AATAACGCTC GATTTTATCA CGCTAACCTT GAGCAAGATT TTGAAGGGCA AGTTTGGGCG
GCTGAACAAT TCGACAAAGT GCTGCTCGAT CCAGCACGTG CGGGTGCGAG TGGGATCATT
GATCAAGTTT CTGTACTTGG CGCACGCCGT ATAGTTTATG TTTCTTGTAA TCCTGCTACC
CTTGCAAGGG ATAGTCAGAG CTTGCTGGAG CAAGGCTACC AATTAACCAA ATTAGGTATG
CTGGACATGT TCCCTCATAC CAGCCATCTA GAGTCGATGG CACTGTTTGA AAAGTCCTGA
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| Protein sequence | MARIFQPKKK TQLNTRHQAV QVERLDHHGA GIAYLKKKPL FIDGALPGEE VVTQLVEEKS
KFARGKLIKI LKPSEARVEP FCSHYHECGG CDLQHLNYDQ QLTHKQQTLR QLMRKFAGSD
IELGAPVLGE SLGYRRRARV SLFVDKKTRQ LHFGFRKKQS KQIAQVTDCP VLAPELNVLL
PEIYSTLKAF KKPEQLGHVE LVLGDNAPCI TLRHLNKLTE KETNTLVELA KRHQASLYLM
PETDQLDLVE GEVPFYQEAG VTVPFTPNNF IQVNQAVNQK MVAQAVDWLD PKSDERVLDL
FCGLGNFSLP IAKRAKHVVG VEGVAEMVEK AVNNASLNQI NNARFYHANL EQDFEGQVWA
AEQFDKVLLD PARAGASGII DQVSVLGARR IVYVSCNPAT LARDSQSLLE QGYQLTKLGM
LDMFPHTSHL ESMALFEKS
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