| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_03521 |
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| Symbol | truD |
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| ID | 5554845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009783 |
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| Strand | - |
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| Start bp | 3570154 |
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| End bp | 3571197 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640909001 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_001446684 |
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| Protein GI | 156975777 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGACA TTTTATCTTC ATTGGCTTAC CTAACAGGTA AGCCAGTTGC ATCTGCAAAA
ATCAAAGCGC AACCAGAGCA CTTTCAGGTT CGCGAAGATT TAGGTTTTGC CTTTACAGGT
GAGGGCGAGC ACTTATTGGT TCGTATCCGT AAAACAGGTG AGAACACCAG TTTTGTTGCT
AACGAACTAG CAAAAGCCTG TGGTGTTAAG TCGAAAGACG TTAGCTGGGC GGGCCTTAAA
GACCGTCATG CTGTGACTGA ACAATGGCTA AGTGTGCATT TACCAAAAGG TGAAACGCCA
GACTTTTCAG CATTTTTGGC GCAACACCCA AGCATAGAAA TCCTTGCAAC GGATCGTCAC
AATAAAAAAC TGCGTCCTGG AGACCTAGTA GGGAACGAGT TCGTGGTGAC TTTGTCTGAA
GTGACAGATG TAGCGGATGT TGAGCAACGC CTTGAAAAAG TGAAACAAGT GGGTGTGCCG
AACTACTTTG GTAGTCAGCG TTTTGGTAAC GATGGCAACA ACCTTGAAGA AGCAAGTCGA
TGGGGGCGCG AGAACGTTCG TACCCGTAAT CAAAACAAGC GCAGTATGTA CCTGTCAGCA
GCTCGTTCAT GGATCTTCAA CCGCATTGTT TCCGCTCGCC TGGAGAATGG TGTGTTTGAC
AAGTTCATCG ATGGTGATGT GGCACAGACA GCTTCTGGTA CTCAGTTAGT TGACGCAAGC
AACATGGCTG CTCTACAAGC ACAATTTGCT CAAGGCGAAG TGGCGATTAC TGCTGCACTG
GCGGGTGATA ACGCGCTACC AACTCAAGCG GATGCGCTAA CCTTAGAACA ACCGTTTTTA
GATGAAGAAC CAGATTTGAT GGCACTGATT CGTGGTAACC GCATGCGTCA CGACCGCCGC
GATATCGCAC TCAAGCCACA AGACCTAGCT TGGACGGTCG ATGGCAATAA CATCACGATG
ACATTCTCGC TGGATGCGGG TTCATTTGCG ACCTCAATCG TGCGTGAGTT GGTCATCGAA
GAAAAGGTAG AAAGAGAATA TTAA
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| Protein sequence | MSDILSSLAY LTGKPVASAK IKAQPEHFQV REDLGFAFTG EGEHLLVRIR KTGENTSFVA
NELAKACGVK SKDVSWAGLK DRHAVTEQWL SVHLPKGETP DFSAFLAQHP SIEILATDRH
NKKLRPGDLV GNEFVVTLSE VTDVADVEQR LEKVKQVGVP NYFGSQRFGN DGNNLEEASR
WGRENVRTRN QNKRSMYLSA ARSWIFNRIV SARLENGVFD KFIDGDVAQT ASGTQLVDAS
NMAALQAQFA QGEVAITAAL AGDNALPTQA DALTLEQPFL DEEPDLMALI RGNRMRHDRR
DIALKPQDLA WTVDGNNITM TFSLDAGSFA TSIVRELVIE EKVEREY
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