Gene VIBHAR_03517 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_03517 
Symbol 
ID5553112 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp3566747 
End bp3567733 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content46% 
IMG OID640908997 
Producthypothetical protein 
Protein accessionYP_001446680 
Protein GI156975773 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTATCA GCAACACAGT AACCAAAGTT GAAGAGTTCG AATATGACAA TGCATCAACG 
GAAGGCATTG CTAACAACGA GCTTGAAAAA ACATCCAACC GAACCAAAAC AGCAGCACGC 
GAAGAATTCG ACGCGAGCAG CAAGAGCCTA GATGCTACTC AGCTTTACTT AGGCGAAATT 
GGTTTTTCAC CTCTACTTAC GGCAGAAGAA GAAGTACTTT ATGCTCGACG TGCGCTGCGT 
GGCGATGAAG CTGCTCGCAA ACGTATGATC GAAAGTAACT TGCGTCTTGT AGTGAAGATC 
TCTCGTCGAT ACAGCAATCG TGGTCTAGCA CTTCTTGATC TCATTGAAGA AGGTAATTTA 
GGTCTGATTC GTGCGGTAGA GAAGTTTGAT CCAGAAAGAG GCTTCCGTTT CTCAACTTAC 
GCGACGTGGT GGATTCGCCA AACGATCGAA CGTGCGTTGA TGAATCAAAC TCGTACAATC 
CGTCTGCCAA TTCATGTGGT TAAAGAGCTG AACATTTATC TGCGTACTGC GCGTGAACTT 
TCTCAGAAGC TCGACCATGA ACCAACAGCA GAAGAGATTG CTGCACAGTT AGATATCCCA 
GTAGAAGACG TAAGCAAAAT GCTTCGCCTT AATGAGCGCA TTAGCTCTGT CGATACACCG 
ATTGGTGGTG ACGGCGAGAA AGCGCTACTG GATATTATTC CTGATGCCAA CAACTCGGAT 
CCTGAAGTTT CCACTCAGGA CGATGACATC AAATCTTCAT TGATCCATTG GCTAGAAGAG 
CTGAATCCAA AACAGAAAGA AGTGCTAGCG CGTCGTTTTG GTCTGCTTGG CTATGAGCCA 
TCAACACTTG AAGAAGTGGG ACGTGAGATT GGTCTAACAC GCGAACGTGT TCGTCAGATC 
CAGGTGGAAG GTTTACGTCG ACTACGCGAG ATCTTGATCA AACAAGGTCT GAATATGGAA 
AACCTGTTCA ACGTTGAAGA CGACTAA
 
Protein sequence
MSISNTVTKV EEFEYDNAST EGIANNELEK TSNRTKTAAR EEFDASSKSL DATQLYLGEI 
GFSPLLTAEE EVLYARRALR GDEAARKRMI ESNLRLVVKI SRRYSNRGLA LLDLIEEGNL 
GLIRAVEKFD PERGFRFSTY ATWWIRQTIE RALMNQTRTI RLPIHVVKEL NIYLRTAREL 
SQKLDHEPTA EEIAAQLDIP VEDVSKMLRL NERISSVDTP IGGDGEKALL DIIPDANNSD 
PEVSTQDDDI KSSLIHWLEE LNPKQKEVLA RRFGLLGYEP STLEEVGREI GLTRERVRQI 
QVEGLRRLRE ILIKQGLNME NLFNVEDD