Gene VIBHAR_03405 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_03405 
SymbolrrmJ 
ID5555342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp3443770 
End bp3444399 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content42% 
IMG OID640908885 
Product23S rRNA methyltransferase J 
Protein accessionYP_001446577 
Protein GI156975670 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0293] 23S rRNA methylase 
TIGRFAM ID[TIGR00438] cell division protein FtsJ 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAAAC AAAAACATTC GGCTAGTTCT GGTCGTTGGT TGAAAGAACA CTTTGATGAT 
AAATACGCAA ACGAAGCTCG TAAAAAAGGC TACCGTTCTC GTGCTTATTT CAAAATTGAA 
GAGATCCAAA CGAAAGATAA ATTGTTGAAA TCTGGGATGA CTGTCGTCGA TTTAGGCGCC 
GCTCCAGGTG GATGGTCTCA ATATGCTGCT AAGATAATAG GTGAAGAAGG TCAAATCATT 
GCATGTGACT TATTGCCTAT GGATCCAATC GCTGGCGTAA GCTTCCTACA AGGTGACTTT 
CGTGACGAGG CAGTATTAGA TGCTCTGTTA GAAAGAATCC AACCTTCAAT GGTGGACGTA 
GTAATGTCTG ACATGGCGCC TAACATTGCT GGTAATAATT CTGTAGATCA GCCACGAGCT 
ATGTATTTAG TTGAATTGGC TTTAGATATG TGTCGACAAG TTCTAGCACC TAATGGTAGC 
TTTGTCGTAA AGGTTTTCCA GGGTGAAGGC TTCGATCAAT TTGTGAAAGA AGTCCGAGAC 
ATGTTTAAAG TCGTAAAAAT CAGAAAACCA GACTCATCGC GAGCTCGCTC ACGAGAAGTC 
TTTGTTGTAG CCACTGGTTA CAAAGGTTAA
 
Protein sequence
MSKQKHSASS GRWLKEHFDD KYANEARKKG YRSRAYFKIE EIQTKDKLLK SGMTVVDLGA 
APGGWSQYAA KIIGEEGQII ACDLLPMDPI AGVSFLQGDF RDEAVLDALL ERIQPSMVDV 
VMSDMAPNIA GNNSVDQPRA MYLVELALDM CRQVLAPNGS FVVKVFQGEG FDQFVKEVRD 
MFKVVKIRKP DSSRARSREV FVVATGYKG