Gene VIBHAR_03284 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_03284 
Symbol 
ID5556267 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp3307581 
End bp3308165 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content43% 
IMG OID640908765 
ProductRNA polymerase sigma factor 
Protein accessionYP_001446459 
Protein GI156975552 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAGTG AAAGCCCACA AAAGCTCGGG CGAAGCGAAT GGAACGATTA TATGGACAAA 
GTGAAAGCGC GAGACAAAGA CGCTTTTGCC TTCGTATTTC GTTTTTATGC ACCAAAGCTT 
AAGCAGTTCG CCTACAAACA TGTTGGTAAT GAGCAAGTTG CAATGGAAAT GGTGCAAGAA 
ACCATGGCGA CTGTTTGGCA AAAAGCTCAT TTATATGACG GCACAAAAAG TGCCTTGTCG 
ACATGGATCT ATACCATTAT CCGTAACCTT TGCTTCGACC TTTTAAGGAA ACAAAAAGGT 
AAGGATTTAC ACATTCATTC TGATGACATT TGGCCGTCAG ACTACTACCC ACCTGATTTG 
GTTGACCATT ATTCACCTGA GCAAGACATG CTCAAAGAAC AGGTAGTCAA ATTTTTAGAC 
ATACTGCCGA AAAACCAAAG AGAAGTACTC CAAGCGGTGT ACCTTCAAGA ACTTCCACAC 
CAACAGGTCG CAGAGTTGTT CGACATACCT TTGGGTACCG TGAAGTCTCG CTTGAGGCTA 
GCGGTTGAAA AGCTAAGGCA TTCGATGCAC ACGGAGCAAT TATGA
 
Protein sequence
MMSESPQKLG RSEWNDYMDK VKARDKDAFA FVFRFYAPKL KQFAYKHVGN EQVAMEMVQE 
TMATVWQKAH LYDGTKSALS TWIYTIIRNL CFDLLRKQKG KDLHIHSDDI WPSDYYPPDL 
VDHYSPEQDM LKEQVVKFLD ILPKNQREVL QAVYLQELPH QQVAELFDIP LGTVKSRLRL 
AVEKLRHSMH TEQL