| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_03253 |
|---|
| Symbol | |
|---|
| ID | 5554473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | + |
|---|
| Start bp | 3276666 |
|---|
| End bp | 3278381 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640908734 |
|---|
| Product | prolyl-tRNA synthetase |
|---|
| Protein accession | YP_001446428 |
|---|
| Protein GI | 156975521 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0442] Prolyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTACCA GTAATTATCT TCTTTCTACT CTGAAGGAGA CTCCAAACGA CGCAGAAGTA
GTGAGCCACC AGCTCATGCT ACGCGCGGGT ATGATCCGTA AGCTGGCTTC AGGTCTATAC
ACCTGGCTGC CTACTGGTCT ACGTGTGCTG CGTAAAGTCG AAAACATCGT TCGTCAAGAA
ATCGACAATG CAGGTGCAGT CGAAACTTTG ATGCCCGTTG TTCAGCCGTT TGAACTATGG
GAAGAGACAG GTCGTTCTGA GAAGATGGGT CCTGAGCTAC TTCGCTTTAC TGACCGTCAT
ACTCGTCCGT TTGTTCTTAG CCCTACAGCT GAAGAAGTGA TCACTAGCCT TGTGCGTAAC
GAAGTGAGCT CTTACAAACA GCTTCCGCTA AACCTGTACC AAATCCAGAC TAAATTCCGT
GATGAGCGTC GCCCACGTTT CGGTGTAATG CGTGCACGTG AATTCTGCAT GATGGATGCA
TACAGCTTCG ACATCGACAA AGAAGGTCTA GAGAAATCTT ACCAAGCGAT GCACGATGCT
TACTGTAAAG CATTCGATCG CATGGGTCTT GAGTACCGTC CAGTACTTGC TGACTCTGGC
GCTATCGGTG GTAGCGGCTC TCAAGAGTTC CACGTACTTG CTGAAAGCGG CGAAGACCTA
ATCGCATTCT CTACTGAGTC TGATTACGCA GCGAACATCG AAAAAGCAGA AGCAGCAGCG
CCTGCAGGTG AGCGTGCTGA GCCAACTCAA GAGATGACAC TGGTTGATAC GCCAAACGCG
AAAACAATCG CCGAGCTTGT TGAACAGCAC GGTCTAGCAA TCGAGAAGAC AGTAAAAACT
CTATTCGTGA AAGCGTCTGA TGAAGTAGAT GCTGACATCA TTGCTCTTAT CGTTCGTGGT
GACCACGAGC TAAACGAAGT GAAAGCAGAA AACCTACCTC AAGTTGCTTC TCCACTAGAG
ATGGCAACAG AAGAGGAAAT GCGTGCACTT ATCGGTGCTG GCGCTGGCTC TCTTGGCCCT
GTAGGCCTTG AACTGCCATT CATCGTTGAC CGCTCTGTTG CTGTAATGAG CGACTTCGGC
GCAGGCGCTA ACATTGATGA CAAACACTAC TTCGGTATCA ACTGGGGTCG TGACGTTGAA
CTAGGCCAAG TTGAAGATCT ACGTAACGTA GTTGAAGGCG ATCCAAGCCC ATGTGGTCAA
GGTACGCTAA TGCTTAAGCG TGGTATCGAA GTTGGTCACA TCTTCCAACT AGGTAACGTT
TACTCAGAAG CGATGAACTG TGGTGTTCTT GGTCCTGACG GTAAAAACGT AATCCTAGAA
ATGGGTTGTT ACGGTATCGG TGTTTCACGT GTTGTTGCTT CTGCAATCGA GCAGAACCAC
GACAAATACG GCATCATCTG GCCAGACGCA CTAGCGCCTT TCCAAGTGGC TATCGTTCCT
ATGAACATGC ACAAGTCTGA AGAAGTGAAA GAAGCGGCTG AGAAGCTGTA CGCTGAACTG
ACGGCTATGG GTATCGAAGT ACTATTCGAT GACCGTAAAG AGCGCCCAGG CGTAATGTTC
TCTGATATGG AACTTATCGG TATTCCTCAC ACTATCGTGA TCGGTGATCG TTCAATGAAA
GAAGGTAACT TCGAGTACAA GAACCGCCGC TCTGGTGAGA AGACAGCCGT TGCGATGGCA
GACATCGTTG AGCACGTTAA AGCTCAGCTA CAATAA
|
|---|
| Protein sequence | MRTSNYLLST LKETPNDAEV VSHQLMLRAG MIRKLASGLY TWLPTGLRVL RKVENIVRQE
IDNAGAVETL MPVVQPFELW EETGRSEKMG PELLRFTDRH TRPFVLSPTA EEVITSLVRN
EVSSYKQLPL NLYQIQTKFR DERRPRFGVM RAREFCMMDA YSFDIDKEGL EKSYQAMHDA
YCKAFDRMGL EYRPVLADSG AIGGSGSQEF HVLAESGEDL IAFSTESDYA ANIEKAEAAA
PAGERAEPTQ EMTLVDTPNA KTIAELVEQH GLAIEKTVKT LFVKASDEVD ADIIALIVRG
DHELNEVKAE NLPQVASPLE MATEEEMRAL IGAGAGSLGP VGLELPFIVD RSVAVMSDFG
AGANIDDKHY FGINWGRDVE LGQVEDLRNV VEGDPSPCGQ GTLMLKRGIE VGHIFQLGNV
YSEAMNCGVL GPDGKNVILE MGCYGIGVSR VVASAIEQNH DKYGIIWPDA LAPFQVAIVP
MNMHKSEEVK EAAEKLYAEL TAMGIEVLFD DRKERPGVMF SDMELIGIPH TIVIGDRSMK
EGNFEYKNRR SGEKTAVAMA DIVEHVKAQL Q
|
|---|
| |