Gene VIBHAR_03183 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_03183 
Symbol 
ID5553596 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand+ 
Start bp3210903 
End bp3212039 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content51% 
IMG OID640908664 
Productsuccinyl-diaminopimelate desuccinylase 
Protein accessionYP_001446359 
Protein GI156975452 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGACA GTCCAGTACT GGCACTCGCT AAAGACCTGA TCAGCCGCCA GTCCGTAACG 
CCTGAAGATG CAGGCTGTCA GGATGTAATG ATCGAGCGAT TAAAAGCGCT TGGTTTTGAA 
ATCGAAGTGA TGGTGTTTGA GGACACCACT AACTTCTGGG CTCGCCGTGG TACAGAAGCA 
CCATTGTTTG CTTTTGCCGG TCACACCGAT GTCGTACCAG CAGGCAAGCT AGAACAATGG 
GACACCCACC CATTTGAGCC GACTATTATC GATGGTTACC TTCACGGTCG TGGCGCCGCA 
GACATGAAAG GCTCGCTAGC GTGTATGGTC GTGGCGGTTG AGCGCTTTAT TGCAGAAAAC 
CCAGACCACA AAGGCTCGAT CGGCTTCTTG ATCACGTCAG ACGAAGAAGG CCCGTTCATC 
AACGGTACGG TTCGCGTGGT TGAAACGCTA ATGGATCGCG GCGAGAACAT CGATATGTGT 
ATCGTTGGCG AACCTTCAAG TACTGAAGTG GTTGGTGATG TCGTGAAGAA TGGCCGCCGT 
GGCTCAATCA CCGGCGATCT AACTGTGAAA GGTACGCAAG GCCACGTGGC CTACCCTCAC 
CTAGCGAACA ACCCAGTTCA TCAGTCACTT ATGGCTATCC ATGAACTTGC CACCACAGAG 
TGGGACCAAG GTAACGACTA CTTCCCTCCG ACTAGCTTCC AGATCCCGAA TGTTTCGGCA 
GGTACTGGCG CGTCTAACGT GATTCCGGGT GAGTTTAACG TTCAATTTAA CCTTCGTTTC 
AGTACTGAAT TGAGCAATGA AGTGATTGTT CAACGCATCA CTGAGACTCT GGATAAACAC 
GAGCTAGACT ACGATCTAAA GTGGACATTC AATGGCGACC CGTTCCTAAC CGATACAGGT 
GCGCTACTTG ATGCCGTCGT TGCGGCGGTT GATGAGGTGA ACAGCACTAA GCCTGCACTT 
CTGACCACAG GTGGTACGTC TGATGGCCGC TTCATCGCAC GCATGGGCGG CCAAGTGGTT 
GAGCTTGGTC CAGTGAACGC GACGATTCAT AAAGTGAACG AGTGTGTAAA AGTCGATGAC 
CTAGAGAAAT TGACCGACAT GTACGAGAAC ACGCTAAAGC ACTTATTGGC AAAATAG
 
Protein sequence
MTDSPVLALA KDLISRQSVT PEDAGCQDVM IERLKALGFE IEVMVFEDTT NFWARRGTEA 
PLFAFAGHTD VVPAGKLEQW DTHPFEPTII DGYLHGRGAA DMKGSLACMV VAVERFIAEN 
PDHKGSIGFL ITSDEEGPFI NGTVRVVETL MDRGENIDMC IVGEPSSTEV VGDVVKNGRR 
GSITGDLTVK GTQGHVAYPH LANNPVHQSL MAIHELATTE WDQGNDYFPP TSFQIPNVSA 
GTGASNVIPG EFNVQFNLRF STELSNEVIV QRITETLDKH ELDYDLKWTF NGDPFLTDTG 
ALLDAVVAAV DEVNSTKPAL LTTGGTSDGR FIARMGGQVV ELGPVNATIH KVNECVKVDD 
LEKLTDMYEN TLKHLLAK