Gene VIBHAR_02948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_02948 
SymboloppB 
ID5556029 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp2972005 
End bp2972925 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content44% 
IMG OID640908430 
Productoligopeptide transporter permease 
Protein accessionYP_001446128 
Protein GI156975221 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTAAAT TCATCGCAAA AAGGATATTT GAAGCGATCC CAACCATGTT GGTTTTGATC 
ACCGTATCTT TCTTTCTTAT GCGTTTCGCT CCTGGGAATC CGTTTTCCAG TGAACGCGCT 
TTACCGCCAG AAGTTATGGC AAACATTGAA GCAAAATACG GCTTAGATAA GCCTGTGTTT 
GAGCAGTACA CCACGTATTT GGCTAACATA TTACAAGGCG ATTTTGGCCC TTCATTTAAA 
TATCTGGATT ATTCTGTAAA CGAGCTTATC TCTGCTGCGC TTCCTGTATC CGCTAAAGTT 
GGTTTCATAG CCTTTATTTT TACGGTAATT ATGGGGGTGA CTGTAGGTAC AATTGCTGCT 
CTCAAGCAAA ACACTTGGAT TGACTATGCA ATCATGTCCA CTGCAATGCT TGGTGTTGTG 
ATGCCATCTT TCGTACTGGC ACCTGCATTG ATCTACGCTT TCTCGTTACA TTTCAACCTT 
CTTCCTGCTG GTGGTTGGTT AGATGGTTCA GCCAAATACC TTGTTTTACC TGTACTTGCA 
ATGTCCCTTC TCTATGTCGC CACGTTTGCT CGTATCACTC GTGGTTCAAT GATCGAAACA 
TTGAACAGTA ACTTTATCCG TACTGCCCGT GCGAAAGGTC TAAGCTACCG TTACATCATC 
CTGAAACACG CATTAAAACC AGCTCTACTC CCTGTTGTGT CTTACATGGG ACCGGCGTTT 
GTCGGCATTA TTACCGGCTC GGTAGTTGTT GAGACCATCT TCGGTCTGCC AGGTATCGGT 
AAGCTGTTCG TAAACGCAGC CTTCAACCGT GACTACTCGC TAGTAATGGG TGTAACCATT 
CTGATTGGTT TCCTATTCAT CTTGTTCAAC GCTATCGTTG ATATTCTGCT AGCAATGATT 
GACCCGAAAA TTCGCTACTA A
 
Protein sequence
MLKFIAKRIF EAIPTMLVLI TVSFFLMRFA PGNPFSSERA LPPEVMANIE AKYGLDKPVF 
EQYTTYLANI LQGDFGPSFK YLDYSVNELI SAALPVSAKV GFIAFIFTVI MGVTVGTIAA 
LKQNTWIDYA IMSTAMLGVV MPSFVLAPAL IYAFSLHFNL LPAGGWLDGS AKYLVLPVLA 
MSLLYVATFA RITRGSMIET LNSNFIRTAR AKGLSYRYII LKHALKPALL PVVSYMGPAF 
VGIITGSVVV ETIFGLPGIG KLFVNAAFNR DYSLVMGVTI LIGFLFILFN AIVDILLAMI 
DPKIRY