| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_02031 |
|---|
| Symbol | |
|---|
| ID | 5552841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | + |
|---|
| Start bp | 2020740 |
|---|
| End bp | 2022086 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640907518 |
|---|
| Product | response regulator |
|---|
| Protein accession | YP_001445223 |
|---|
| Protein GI | 156974316 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTGGA TACATAAATT AATCTTTGCA TTGTCGATAT GCACCATCAG TTTGGTGGCG
CTTTACAGTT TGCTTGGTGA TACTCGTAAA CTGCTTGTGA CACCAGACTT GTTCAATATC
CACGCAACAA ACGATGCAGC CGCTGGTGGC CTTAGCGAGT CTGACATTAC CTACCAGAAT
CACAGCTTAG TGTTGAACTG TGATTTGAGA GAGAGCAAAT ATGCATGGCC ATACTGCGGA
ATCTCAGTCT ATACCGACGT AACGGAAGCA ACAAAAGGGC TCGATCTTTC TAGTTACCAT
ACCGTTCGTC TTAAAGTCCG CTATGAATCG GCAGGGAAGG GAGAGAACCC TAGTAAGAAC
TTACGTTTGT ATTTGAGAAA CTTTAACTCG GCTTACTCTG ATCCAAACGA TGAGTACACC
ATTAAATACA ATGACATGCA GTTTTCTCCG TCAGATTTCA GTGAGATCAT CGAAATCCCA
ATTGCAAACC TTCAGGTGAT GACATGGTGG TTGAATGACA ACGATGTCGC GATTGAACAT
TCCGCACCGG AGTTCTCCAA TATCACCCGA ATTGATATCG CAACCGGAGC GGGTGCCGCT
CTTGGTAACC ACAAAATTGT AATCGACAAA ATCGAGTTCG AAGGGGCATA CATAGAGCAG
TCGACACTGC TGTTTGCTTT GTTATTCTCA TGGATGGCGC TGGGATTAGC ATTCTCACTA
CAAGAAATGC GTAAAAATAA AACCGCATAC AACAAAGTAC GGAAACGCCA CCGCCATTTA
GAGAAGGTGA ATTCGACGCT TCGTACACAA AATTATGAAT TTGCGGAACT GGCTCATCGC
GATGCTTTAA CTGGTGCGAT GAACCGCCAC GCGGTACAAA GTTGGCTAGA TCAGCAAGCA
CGACAAGTTC GATGGGGGCA TGACTCGTTC TCCATTCTTT ACATGGACTT GGATAAGTTT
AAACGTGTTA ACGATAAATA TGGCCATCAG ATGGGCGATG ATATCTTGCG TGAATTTGTG
ATGGTGATTG CAAGCTCAAT CCTACCTGAA GACCGCCTTG TTCGTTGGGG AGGGGAAGAA
TTTGTGGTCT TCTGTCCGAA CACGAATATC GAACAAGCCG TTAAAAAAGC GGAATTGATC
AGAGATAATG TTGAGAAGCA TCTTTGGGTG CATGGTGAGC TTTTGACGTG CAGCATTGGT
GTTGCTCAAA TGCAGAATGA GCGTGTCTCT GAAACCATGG CGCGTGCCGA TGAAGTCTTG
TATTTGGCCA AACGTAACGG CCGAAATAGA ATAGAGGTGA ACTACGGTAT GCAAAAGCAA
TCTGAAGCTG CAATTGAGAC ATCATAG
|
|---|
| Protein sequence | MKWIHKLIFA LSICTISLVA LYSLLGDTRK LLVTPDLFNI HATNDAAAGG LSESDITYQN
HSLVLNCDLR ESKYAWPYCG ISVYTDVTEA TKGLDLSSYH TVRLKVRYES AGKGENPSKN
LRLYLRNFNS AYSDPNDEYT IKYNDMQFSP SDFSEIIEIP IANLQVMTWW LNDNDVAIEH
SAPEFSNITR IDIATGAGAA LGNHKIVIDK IEFEGAYIEQ STLLFALLFS WMALGLAFSL
QEMRKNKTAY NKVRKRHRHL EKVNSTLRTQ NYEFAELAHR DALTGAMNRH AVQSWLDQQA
RQVRWGHDSF SILYMDLDKF KRVNDKYGHQ MGDDILREFV MVIASSILPE DRLVRWGGEE
FVVFCPNTNI EQAVKKAELI RDNVEKHLWV HGELLTCSIG VAQMQNERVS ETMARADEVL
YLAKRNGRNR IEVNYGMQKQ SEAAIETS
|
|---|
| |