| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_01756 |
|---|
| Symbol | |
|---|
| ID | 5554574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | + |
|---|
| Start bp | 1761292 |
|---|
| End bp | 1764453 |
|---|
| Gene Length | 3162 bp |
|---|
| Protein Length | 1053 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640907247 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001444952 |
|---|
| Protein GI | 156974045 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGAT TCTTTATCGA TCGTCCGGTA TTTGCTTGGG TACTTGCGAT TCTGACCATG
TTGGCGGGCG TGATGTCTCT GTTCAACTTG CCGGTTTCTC AATACCCGAC GATTTCACCG
ACCACGATCT CTATCAATGC CCGTTACCCT GGTGCTTCTG CGAAAACCGT AGAAGACTCA
GTGACTCAGG TTATCGAGCA AAACATGACG GGTCTGGACT ACCTACGCTA CCTAAACTCG
AGCAGTGATG CGTTTGGTAA CGCGACCATT ACGCTGACGT TTGATAGCGA AGCGGATCCA
GATATCGCGC AAGTTCAGGT GCAAAACAAA CTGCAATTGG CGATGACATC ACTTCCGATG
GAAGTACAAA GCCAAGGTAT CATCGTAAAC AAATCCAACA CCTCATTCTT GATGGTTGTG
GCGGTTTACT CTGAAGCCCC TGACTTTACG GAAAATGACA TTGGCGACTT TGTTGTTACC
AATATTCAAG ATCCGATCAG CCGTGTAACG GGCGTAGGTC AAGTGCAAGC GTTTGGTTCT
CAATACGCAA TGCGTGTTTG GCTAGACCCA TTCAAACTGA CGCAGTTCAA TCTAACGGCA
ATCGACGTCG CGAACGCTAT TCGTGAGCAG AACGCACAGG TTTCTTCTGG TCAGTTAGGT
GCAGCGCCTG CTCAGTCTGG TCAGTTGCTT AACGCGACGA TTTCTTCAGC AAGCCGTCTA
ACCAGCGTGG CTGAATTTAG AAACATCATT CTGAAATCAG AAGCGAACGG TTCGAACGTT
TACCTGAAAG ATGTGGCACG TGTTGAGCGC GGCGCAGAAA GCTACGATAT CAAAGGTCAG
TACAATGGCT TCCCGGCAGC AGGTCTTGGT ATCTCACTAG GTACTGGTGC GAACGCGCTA
GAAACAGCAG AAGCAGTAAA AGAACGCCTT GGCCAGTTAA GTGCGACTTT CCCTGATGGC
TTGAAGATCG CTTACCCGTT TGAGACAACG CCATTCGTTG ATGCGTCGAT CAAAGAAGTA
ATCAAGACAC TGCTTGAAGC GATCGTGTTG GTATTTTTGA TCATGTACCT GTTCTTGCAG
AACTTCCGTG CAACGATCAT CCCGACGATT GCGGTTCCGG TGGTATTGTT GGGTACGTTC
GCGATCCTTT ACGCGACCGG CTTTAGTGTT AACACCTTAA CCATGTTTGC TATGGTTCTG
GCAATCGGCT TGCTGGTGGA CGATGCGATC GTTGTGGTAG AGAACGTGGA ACGTGTAATG
CACGAAGACG GTCTCGTTCC AAAAGAAGCA ACCAAGAAGT CAATGGGGCA GATCACTGGC
GCGCTAGTGG GTGTTGGTTT GACGCTGTCT GCGGTATTCG TACCGATGGC GTTCATGTCT
GGCTCAACTG GTGTTATCTA CCGTCAGTTC TCTATCACCA TCGTAGCGGC GATGACGCTC
TCGGTATTGG TGGCGATCAT TCTTACTCCG GCACTTTGTG CTAGCTTGCT GAAGAAAAGC
GATGCAGAGT TTTCGGATAA GAAAGGTTTC TTCGGCTGGT TCAACCGTAA GTTTGATGCG
GCAACGGCGG GTTACGAAGC GGGCGTAGCG AAAATGCTAA AACGCACTGG TCGTATGCTG
TTGGTATTCG CAGCAATGAG TGCGGGTGCA GGTTGGTTGT TCATGAACCT ACCGACGTCT
TTCCTACCGG ATGAAGACCA AGGTACTGTG TTCTCAATGG CAATTTTGCC ACCGAACTCG
ACTCAAGAGC AGACTGAAAA GACACTAGAA AAAGTCCGTA ACTACTTCCT AGAAGAAGAG
AAAGACAACG TTGCGTCAGT GTTCTCGGTT GCGGGCTTCA GCTTCGCGGG TCAAGGTCAG
AACATGGGTA TGGCGTTTAT CGGTCTGAAA GATTGGTCAG AACGTGAAGC TCCGGGTTCG
GATGCGGCTT CGTTAACTGG TCGTGCGATG GGTTACTTCT CAACCATTAA AGAAGCAATG
GTGTTTGCGT TTGCGCCACC GGCGATTCAA GAGTTGGGTA ACGCGACTGG TTTCGACTTC
TATCTACAAG ACTCAACCGG TAACGGTCAT GAAGCGCTTG TGGCGGCTCA ATACCAAATC
CTAGGTATGG CAGCACAAAA CCCGAAACTG GTGGGTGTGC GTCCAAACGG TCAGGCAGAT
GCGCCGATGT ACCAAGTGCA TATCGACCAC GTGAAATTGC GTGCGCTTGA TGTGAGCATT
AACGATGTAA ACCAAATCCT AGCTTCGGCA TGGGGTGGTG CGTACATCAA CGATTACATC
GACCGCGGAC GCGTGAAAAA GGTAATGGTA CAGAGTGACG CAGAACACCG CATGCAGCCG
AAAGATTTCG ACTCATGGTA CGTGCGTAAC TCACAAGGTG AAATGGTGCC ATTCTCGGCA
TTCGCAACGG GTGAGTGGAC TTACGGTTCT CCGCTATTGC AACGCTTTAA CGGTCTACCT
GCGATGAACA TCCAAGGTGG CGCGGCTCCG GGCGTAAGTA CTGGTGAAGC GATGGCAGAA
ATTGAAGCCA TGGTAGAAAA ATTGCCTCCT GGCTTTACGG TGAACTGGAA CGGTATCTCT
TACGAGGAAC GTCTGTCTGG TAACCAAGCG CCAATGCTTT ACGCGCTGTC GATTCTGGTT
GTCTTCCTTG TACTAGCAGC ACTTTATGAG AGCTGGTCAG TACCATTCGC GGTTGTACTT
GTAGTGCCTC TGGGTGTGCT AGGTGCGGTA CTTGCGGTCA TGACTCGCGG TATGGATAAC
GACGTATTCT TCCAAGTTAG CTTGTTGACC ACTGTTGGTC TGGCAACGAA GAACGCGATC
CTTATCGTGG AATTCGCGAA GGAATACTAC GAGAAAGGCG CGGGCTTGAT TGAAGCAACG
TTGCATGCGG TACGCGTCCG TCTTCGTCCG ATCATCATGA CCTCGCTTGC GTTTGGTCTT
GGCGTAGTAC CGCTAGCGAT CAGTGCGGGT GTAGGCTCTG CGGGTCAGAA CGCGGTAGGT
ACAGGTGTAC TTGGCGGTAT GGTAAGTGCG ACCTTGCTTG GTATCTTCTT CGTGCCGGTG
TTCTTCGTTG TGGTTGAGCG TTTGTTCGAC CGCCGCGCAA GAAAAGAAGC ACAAAAAGAG
CAAGTGGAAT CTACTTCACA ACCAACGGCA AGCCAAGAGT AG
|
|---|
| Protein sequence | MARFFIDRPV FAWVLAILTM LAGVMSLFNL PVSQYPTISP TTISINARYP GASAKTVEDS
VTQVIEQNMT GLDYLRYLNS SSDAFGNATI TLTFDSEADP DIAQVQVQNK LQLAMTSLPM
EVQSQGIIVN KSNTSFLMVV AVYSEAPDFT ENDIGDFVVT NIQDPISRVT GVGQVQAFGS
QYAMRVWLDP FKLTQFNLTA IDVANAIREQ NAQVSSGQLG AAPAQSGQLL NATISSASRL
TSVAEFRNII LKSEANGSNV YLKDVARVER GAESYDIKGQ YNGFPAAGLG ISLGTGANAL
ETAEAVKERL GQLSATFPDG LKIAYPFETT PFVDASIKEV IKTLLEAIVL VFLIMYLFLQ
NFRATIIPTI AVPVVLLGTF AILYATGFSV NTLTMFAMVL AIGLLVDDAI VVVENVERVM
HEDGLVPKEA TKKSMGQITG ALVGVGLTLS AVFVPMAFMS GSTGVIYRQF SITIVAAMTL
SVLVAIILTP ALCASLLKKS DAEFSDKKGF FGWFNRKFDA ATAGYEAGVA KMLKRTGRML
LVFAAMSAGA GWLFMNLPTS FLPDEDQGTV FSMAILPPNS TQEQTEKTLE KVRNYFLEEE
KDNVASVFSV AGFSFAGQGQ NMGMAFIGLK DWSEREAPGS DAASLTGRAM GYFSTIKEAM
VFAFAPPAIQ ELGNATGFDF YLQDSTGNGH EALVAAQYQI LGMAAQNPKL VGVRPNGQAD
APMYQVHIDH VKLRALDVSI NDVNQILASA WGGAYINDYI DRGRVKKVMV QSDAEHRMQP
KDFDSWYVRN SQGEMVPFSA FATGEWTYGS PLLQRFNGLP AMNIQGGAAP GVSTGEAMAE
IEAMVEKLPP GFTVNWNGIS YEERLSGNQA PMLYALSILV VFLVLAALYE SWSVPFAVVL
VVPLGVLGAV LAVMTRGMDN DVFFQVSLLT TVGLATKNAI LIVEFAKEYY EKGAGLIEAT
LHAVRVRLRP IIMTSLAFGL GVVPLAISAG VGSAGQNAVG TGVLGGMVSA TLLGIFFVPV
FFVVVERLFD RRARKEAQKE QVESTSQPTA SQE
|
|---|
| |