Gene VIBHAR_01700 details

Gene Information

• Locus tag: VIBHAR_01700
• ID: 5554060
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009783
• Strand: +
• Start bp: 1707822
• End bp: 1709693
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640907191
• Product: hypothetical protein
• Protein accession: YP_001444896
• Protein GI: 156973989
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTGCCG TTTTAAAAAA ACAACTACGC CGACTTGTTT GGTCTGTTGC ATGTACTTTG 
AGTTTGTTGT CGGCATTGCC TTTACACGCA TCAGAGTTGG ATTGGCCTGA TCAGCCGTTT 
CGTTACTATG CCGACAACGA CTCTTTAAAA GAACTATTGA ATAACTTTGG CGCTAACTAT 
CGTGTTTCTG TGTCGGTCAG TGACAAGGTT AATGATCGAG TCAGTGGTCG ATTTACGCCT 
GAAGACCCAG CCGAGTTTCT TGATTACCTA GCACAGGTCT ACAACCTGAT GTGGTATTTC 
GATGGCGCGG TGTTGCATGT GTACAAAGCG ACGGAAACCC GTTCACGACT GCTACAGCTT 
GAACTTCTGA CGGCACGTGA GCTGCGCAGT ACTCTGATAT CGACAGGGGT TTGGGATTCT 
CGCTACGGTT GGCGTGCGGC AGAGAACAAA GGGTTGGTTT ATTTAGCGGG CCCACCTAGA 
TACGTTGATT TGGTTGTGCA AACGGCCGAA GCGCTGGAAA GCCGATTGGT TCAAAAGTCG 
AACTCTACTG ATGAGCTGTT TGTTGAAATT ATTCCTTTGA AATATGCCTC GGCGACGGAC 
AGAGAAATCA CTTATCGCGA TCAAGCGGTG ACGGTGCCGG GCATTGCATC GGTATTAAGC 
CGAGTATTGT CGGGTGTTCA AACTCAGATC AAAGCAACCA AAGAGAGTGA AGAAACGGAC 
ATCAATACGG CTGCAACCAC GACAAAGAAT GTTTCTGTAC ACGGCGGTGC GTCGGTTGAA 
GCAGAGCCAG GTTTAAACGC CATCATAGTG CGTGATACGC AAGCGCGCCT GCCTTTGTAC 
CGTAAGTTAG TCGCTCAGTT GGATCAGCCG CAGTCGCGAA TCGAAGTGGC ACTCTCGATT 
GTCGATATCA GCGCGAACGA TTTGAGCCAA CTGGGTGTGG ATTGGCGAGC GGGTATTGAG 
GTCGGTAACA ACAGTATTTT GGACATCAAA ACCACAGGTG ACGTGGATGG TGGTGATGTA 
ACGCTAGGCA GCGGGCAGAC CTTTAAGTCA CTGCTTGATG CGACCAATTT AAACTACTTG 
TTGGCTCAAA TTCGTTTGTT GGAATCTCAG GGTAGTGCTC AAGTCGTGTC TCGACCGACT 
TTACTAACTC AAGAAAACGT TGAGGCGGTG TTGAACAACA GCAGCACGTT CTACATCAAG 
TTGATTGGTA GAGAAACGGC GGCGCTTGAA GAAGTGACCT ACGGTACCTT ACTGCGAATC 
GTCCCACGTA TTGTCGGAGA CCGATTTGTT GAAAGACCAG AAATCAATCT GAGTTTGCAT 
CTTGAAGATG GTGCGCAAAT TCCAGATGGC GGTGTTGATG ATGTGCCATC CATCCGCAAG 
ACAGAGATCA GCACGTTGGC GACGGTGAAA CAAGGGCAGA GCCTACTCAT CGGTGGTGTG 
TACCGTGATG AAGTGAGTCA CCAACTGCGT AAAGTGCCTT TGTTAGGAGA CATCCCATAC 
CTTGGTGCCT TGTTTAGAAG TACCACTGAT ACCACCAGAA GAACGGTGCG CATGTTCATT 
ATTGAGCCGA GAATTGTTGT CGATGGTATT GGTGACAACG TGCTTATCGG TAATGAGTAT 
GACTTAAGAC CGAAGCTCGG CACCTTGAAC AATATTTCAA ATAATAGTGC AGAGCTGAAA 
TCGGCACTCG CGCTCTACAG CTGTACATCT CAAGTGCAAG CGGAGCGTCA TCAGCAAGAT 
CTATTGTCAC AGGGCAAATC TTCGCTGTTA TCACAATGTG AGTTGCCTTC AGGGCAAAAA 
GGATGGCGAG TGCAAATCAA AGAGTGTGAT GGCTCAGAGA ATCATTGCGT TCGTCCATTA 
GAGGAGCAAT AG 

 

Protein sequence

MLAVLKKQLR RLVWSVACTL SLLSALPLHA SELDWPDQPF RYYADNDSLK ELLNNFGANY 
RVSVSVSDKV NDRVSGRFTP EDPAEFLDYL AQVYNLMWYF DGAVLHVYKA TETRSRLLQL 
ELLTARELRS TLISTGVWDS RYGWRAAENK GLVYLAGPPR YVDLVVQTAE ALESRLVQKS 
NSTDELFVEI IPLKYASATD REITYRDQAV TVPGIASVLS RVLSGVQTQI KATKESEETD 
INTAATTTKN VSVHGGASVE AEPGLNAIIV RDTQARLPLY RKLVAQLDQP QSRIEVALSI 
VDISANDLSQ LGVDWRAGIE VGNNSILDIK TTGDVDGGDV TLGSGQTFKS LLDATNLNYL 
LAQIRLLESQ GSAQVVSRPT LLTQENVEAV LNNSSTFYIK LIGRETAALE EVTYGTLLRI 
VPRIVGDRFV ERPEINLSLH LEDGAQIPDG GVDDVPSIRK TEISTLATVK QGQSLLIGGV 
YRDEVSHQLR KVPLLGDIPY LGALFRSTTD TTRRTVRMFI IEPRIVVDGI GDNVLIGNEY 
DLRPKLGTLN NISNNSAELK SALALYSCTS QVQAERHQQD LLSQGKSSLL SQCELPSGQK 
GWRVQIKECD GSENHCVRPL EEQ