Gene VIBHAR_01560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_01560 
Symbol 
ID5553426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp1567708 
End bp1568238 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content45% 
IMG OID640907051 
Producthypothetical protein 
Protein accessionYP_001444757 
Protein GI156973850 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATCATTT TCAATAAGCC TTATGACACA TTAAGCCAAT TTACTGATGG CGATGGCCGT 
AAAACACTAG CTGATTATAT TCCTGTAAAA GATGTTTATG CGGCAGGCCG ATTAGACAGA 
GACAGCGAAG GTTTGATGGT GCTCACTAAC GACGGCATTC TGCAGGCTAA GTTGACCCAA 
CCTCAATCAA AATCACCAAA GACCTATTGG GTGCAAGTAG ACGGTGCTCC GACTGAAGAG 
GATTTAGAGA AACTACGTAA AGGCGTTGAA TTGAAAGATG GCATGACATT GCCAGCAAAA 
ATAGAAGTGA TGCCTGAGCC AGAGATCTGG GAAAGAACTC CACCTGTCCG CTTTCGAGCA 
AACATTCCGA CTACTTGGTT AGCTATCACT ATTATAGAAG GGAGAAACCG TCAGGTAAGA 
CGTATGACCG CGCACATTGG CTTCCCAACA CTGCGTTTAG TTCGTTACTC GATGGGCGGT 
ATTGCCCTTG ACGATTTAAA ACCTGGGGAG TGGCGAGAAA TAAAGCTCTA G
 
Protein sequence
MIIFNKPYDT LSQFTDGDGR KTLADYIPVK DVYAAGRLDR DSEGLMVLTN DGILQAKLTQ 
PQSKSPKTYW VQVDGAPTEE DLEKLRKGVE LKDGMTLPAK IEVMPEPEIW ERTPPVRFRA 
NIPTTWLAIT IIEGRNRQVR RMTAHIGFPT LRLVRYSMGG IALDDLKPGE WREIKL