Gene VIBHAR_01288 details

Gene Information

• Locus tag: VIBHAR_01288
• Symbol: flgD
• ID: 5552886
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009783
• Strand: +
• Start bp: 1294040
• End bp: 1294747
• Gene Length: 708 bp
• Protein Length: 235 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640906780
• Product: flagellar basal body rod modification protein
• Protein accession: YP_001444492
• Protein GI: 156973585
• COG category: [N] Cell motility
• COG ID: [COG1843] Flagellar hook capping protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCGGAA TTAACAACGT TGGTCAAAGC GGCTTGTCCT ATATCGACCA GCTTAAAAGC 
CTACAAGAGA ACAAGAAGAC TGAAGAGAGT ACGGGTAAGC AGGACCTGAA ACAGGAAGAC 
TTCCTATCTT TGCTCACCAA GCAATTGTCT CAGCAGGACC CTTTTAAGCC GGTAGGGAAT 
GACCAGATGA TTGCGCAAAT GGCGTCATTT GCGACCGTAG ATGGCATCGG CAAGATGAAC 
TCTCAGTTCG AGAGTTTGAA CTCGTCAATG ACATCAAACC AAGCGTTACA AGCTTCCTCT 
TTGGTTGGTC GTGACGTGTT GGTCCCTGGC GCGGCGGGTG TAAAGCAAGA CAATGCAACA 
ATGGCGGCAA TGGTTAAGCT TGCACAACCT CTCGACAACC TGTTTGTTCG AGTGGAAAAC 
GAAGCGGGCC AATTGGTGCG TACTTTTGAG GTAGGTGCGA AACCAGCCGG CGACACTCGT 
GTGCTTTGGG ACGGTAATGA TGAAAACGGA AATCCAATGC CTGCTGGCAA ATACAATGTG 
AAAGCGTCTG GCTTAGTAGA TGGGGAGTCG CAAGAGTTCC CAGTGTCTAC TTACGCGAAC 
GTGAACAGTG TATTGCTAGG TAAGGGCGAC GGAAACGTAT TACTCAATCT GGCAGGTTAT 
GAATCGCCAG TTCGACTTGC AGAAGTATTG GAAGTCGGCA AAGCGTAA 

 

Protein sequence

MAGINNVGQS GLSYIDQLKS LQENKKTEES TGKQDLKQED FLSLLTKQLS QQDPFKPVGN 
DQMIAQMASF ATVDGIGKMN SQFESLNSSM TSNQALQASS LVGRDVLVPG AAGVKQDNAT 
MAAMVKLAQP LDNLFVRVEN EAGQLVRTFE VGAKPAGDTR VLWDGNDENG NPMPAGKYNV 
KASGLVDGES QEFPVSTYAN VNSVLLGKGD GNVLLNLAGY ESPVRLAEVL EVGKA