Gene VIBHAR_01250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_01250 
SymbolprfA 
ID5554561 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand+ 
Start bp1259948 
End bp1261036 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content49% 
IMG OID640906742 
Productpeptide chain release factor 1 
Protein accessionYP_001444456 
Protein GI156973549 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCCT CTATTCTGAC TAAGCTAGAA ACGCTAGTAG AACGTTACGA AGAAGTTCAA 
CATCTTCTTG GTGATCCTGA TGTAATCGGA AATCAGGATA AATTCCGCGC TCTATCAAAA 
GAGTACTCTC AGCTAGAAGA AGTTACTAAG TGCTTCCAAG CGTATCAACA AGCGCAAGAC 
GATCTTGCGG CTGCTGAAGA TATGGCGAAC GAAGACGACG AAGAAATGCG TGAAATGGCG 
CAGGAAGAAA TCAAAGAAGC AAAAGAAGCG ATCGAGCGTC TGACTGATGA GCTACAAATT 
CTTCTTCTTC CGAAAGATCC AAACGATGAC CGTAACTGTT TCCTAGAAAT CCGTGCAGGT 
GCGGGTGGTG ATGAAGCGGG TATCTTCGCT GGTGACCTGT TCCGTATGTA CAGCAAATAC 
GCAGAAAAGC GTGGCTGGCG TATCGAGGTT ATGTCTTCAA ACGAAGCAGA ACACGGCGGC 
TACAAAGAGA TGATCGCGAA AGTGAGCGGC GACGGCGCAT ACGGCGTGCT GAAGTTTGAG 
TCAGGCGGTC ACCGTGTACA ACGTGTACCT GCAACAGAAT CTCAAGGTCG TGTTCATACT 
TCTGCGTGTA CCGTAGCGGT TATGGCGGAA ATCCCAGAAG CGGATCTGCC AGAAATCAAA 
GCAGCAGACC TAAAAATCGA TACTTTCCGT GCATCTGGCG CGGGTGGTCA GCACGTTAAC 
ACCACTGACT CGGCAATCCG TATTACCCAC TTACCAACTG GTACAGTAGT AGAGTGTCAG 
GACGAGCGTT CACAGCATAA GAACAAAGCG AAAGCGATGG CTGTACTTGC TGCGCGTATC 
GTTCAAGCGG AAGAAGAGCG TCGTGCGGCA GAAGTGTCTG ACACACGTCG TAACCTACTA 
GGTTCTGGTG ACCGTAGTGA CCGTATCCGT ACTTACAACT ACCCACAAGG CCGTGTTTCT 
GACCACCGTA TCAACCTAAC CATCTACCGT TTGAATGAAG TGATGGAAGG TGACCTACAA 
AGCTTGATCG ACCCTGTTGT TCAAGAGCAC CAAGCAGACC AACTAGCGGC GCTAGCTGAG 
AACGGCTAA
 
Protein sequence
MKASILTKLE TLVERYEEVQ HLLGDPDVIG NQDKFRALSK EYSQLEEVTK CFQAYQQAQD 
DLAAAEDMAN EDDEEMREMA QEEIKEAKEA IERLTDELQI LLLPKDPNDD RNCFLEIRAG 
AGGDEAGIFA GDLFRMYSKY AEKRGWRIEV MSSNEAEHGG YKEMIAKVSG DGAYGVLKFE 
SGGHRVQRVP ATESQGRVHT SACTVAVMAE IPEADLPEIK AADLKIDTFR ASGAGGQHVN 
TTDSAIRITH LPTGTVVECQ DERSQHKNKA KAMAVLAARI VQAEEERRAA EVSDTRRNLL 
GSGDRSDRIR TYNYPQGRVS DHRINLTIYR LNEVMEGDLQ SLIDPVVQEH QADQLAALAE 
NG