Gene VIBHAR_01173 details

Gene Information

• Locus tag: VIBHAR_01173
• ID: 5555299
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009783
• Strand: -
• Start bp: 1191030
• End bp: 1192895
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640906665
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_001444390
• Protein GI: 156973483
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTCTTG ATATTTCAAA GTACCCAACA CTGGCGTTAG CAAATACACC GGAGGAGTTG 
CGTCTTCTTC CGAAAGAAAC ATTGCCAACA TTGTGCGATG AACTACGCAC GTATCTGCTA 
AATTCAGTGA GTCAGTCTAG CGGACACTTA GCGTCTGGCT TAGGCACAGT AGAGCTAACC 
GTAGCTCTGC ATTATGTATA CAACACACCC GTAGATCAGT TGATCTGGGA CGTAGGCCAC 
CAGGCTTACC CACACAAGAT TCTCACTGGT CGTCGTGATC AGATGCCAAC TATCCGTCAG 
AAAGACGGCC TTCACCCATT CCCATGGCGT GAAGAGAGCG AATACGACAC CCTATCCGTT 
GGTCACTCAT CTACTTCTAT CAGTGCAGGT CTTGGCATGG CCATCAGTGC GCAAAAAGAA 
GGTGAAGGTC GTAAAGTGGT CAGCGTTATT GGCGACGGTG CAATCACCGC TGGTATGGCT 
TTCGAAGCGA TGAACCACGC TGGTGACGTT CACCCAGATA TGCTGGTGAT TCTGAACGAT 
AACGAAATGT CGATCTCAGA AAACGTAGGC GCACTGAACA ACCACCTTGC TAAAGTCCTT 
TCTGGCAGCC TATACACCTC TATCCGTGAA GGCGGTAAGA AAGTGTTGTC TGGCGTCCCA 
CCAATTAAAG AGCTGGTTCG TCGTACGGAA GAACACCTAA AAGGCATGGT TGTTCCTGGC 
ACCTTATTCG AAGAGCTAGG CTTCAACTAC ATCGGCCCTA TTGATGGACA CGATGTGAAT 
GAGCTAGTTA AAACGCTGAA AAACATGCGT GAGCTGAAAG GCCCTCAATT CCTGCACATC 
ATGACCAAGA AAGGCAAAGG TTATGAGCCA GCAGAAAAAG ACCCTATTGG TTATCACGCA 
GTGCCAAAGT TTGCTCCCTC AAACAACAGT TTGCCGAAGA GCAGCGGTGG CAAGCCAAAC 
TTCTCTAAGA TCTTTGGTGA TTTCCTATGT GACATGGCGG CGCAAGATCC TAAGCTGATG 
GCGATTACGC CAGCGATGCG TGAAGGCTCT GGTATGGTTC GCTTCTCGAA AGAGTACCCA 
GAACAGTACT TTGACGTCGC GATTGCAGAA CAGCACGCCG TGACTCTCGC GACGGGTATG 
GCAATTGCGG GCGATCATCC GATTGTAGCA ATCTACTCTA CCTTCCTACA GCGTGGTTAC 
GATCAGTTGA TTCACGATGT GGCGATCATG GACTTGCCGG TGATGTTCGC TATCGACCGT 
GCTGGTCTGG TTGGCGCCGA TGGCCAAACC CACCAAGGTG CGTTTGATCT TAGCTTCATG 
CGTTGTATCC CGAACATGGT GATCATGGCT CCAAGTGACG AAAACGAATG TCGTCAAATG 
CTGTACACGG GTCATAAGCA CACAGGTCCA AGCGCGGTTC GTTACCCACG CGGTAGCGGC 
ATGGGCACAG ACATCGAAAA AGACTTCACT GCACTTGAAA TCGGTAAAGG TCGTATCGTT 
CGTAAAGGTG AAAAAGTGGC AATTCTTAGC TTCGGTACCT TCTTAGGTAA CGCGCTAGAA 
GCAGCTGAAA ACCTAAACGC AACGGTAGCA GACATGCGCT TTGTTAAGCC ACTTGATGAA 
GCCTTGATCC GACAGCTAGC AGCTGAGCAC GATGTGCTAG TTACGCTCGA AGAAAACGCG 
ATCGCTGGTG GTGCTGGCGC GGGTGTGATT GAGTTTATGA TGCAAGATAA GATCATCAAG 
CCTGTACTCA ACCTTGGCCT GCCAGATCGC TTCGTTCCTC AAGGCACACA AGACGAGCTA 
CACGAAGATC TTGGCTTAGA TGCGAAAGGC ATCGAGAAGT CGATCAACGA TTACTTAGCT 
AAGTAA 

 

Protein sequence

MTLDISKYPT LALANTPEEL RLLPKETLPT LCDELRTYLL NSVSQSSGHL ASGLGTVELT 
VALHYVYNTP VDQLIWDVGH QAYPHKILTG RRDQMPTIRQ KDGLHPFPWR EESEYDTLSV 
GHSSTSISAG LGMAISAQKE GEGRKVVSVI GDGAITAGMA FEAMNHAGDV HPDMLVILND 
NEMSISENVG ALNNHLAKVL SGSLYTSIRE GGKKVLSGVP PIKELVRRTE EHLKGMVVPG 
TLFEELGFNY IGPIDGHDVN ELVKTLKNMR ELKGPQFLHI MTKKGKGYEP AEKDPIGYHA 
VPKFAPSNNS LPKSSGGKPN FSKIFGDFLC DMAAQDPKLM AITPAMREGS GMVRFSKEYP 
EQYFDVAIAE QHAVTLATGM AIAGDHPIVA IYSTFLQRGY DQLIHDVAIM DLPVMFAIDR 
AGLVGADGQT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGHKHTGP SAVRYPRGSG 
MGTDIEKDFT ALEIGKGRIV RKGEKVAILS FGTFLGNALE AAENLNATVA DMRFVKPLDE 
ALIRQLAAEH DVLVTLEENA IAGGAGAGVI EFMMQDKIIK PVLNLGLPDR FVPQGTQDEL 
HEDLGLDAKG IEKSINDYLA K