Gene VIBHAR_01067 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_01067 
SymbolispG 
ID5556360 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand+ 
Start bp1074481 
End bp1075599 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content48% 
IMG OID640906561 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_001444287 
Protein GI156973380 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACACG AATCTCCAAT TATTCGTCGT AAATCGACGC GTATTTATGT GGGTGATGTG 
CCAATTGGTG ATGGTGCACC AATTGCAGTA CAGTCAATGA CAAACACTCG CACGACTGAT 
GTGGAAGCCA CAGTCGCACA AATCCGAGCA TTAGAAAAAG TGGGTGCAGA CATTGTACGT 
GTTTCTGTTC CTACTATGGA TGCTGCGGAA GCCTTTAAGC TCATCAAACA GCAAGTGTCT 
GTGCCGTTAG TTGCGGACAT TCACTTTGAC TACCGTATTG CCCTGAAAGT GGCCGAGTAC 
GGTGTTGATT GTTTGCGTAT CAACCCAGGC AATATCGGTA ACGAAGAGCG TATTCGCTCT 
GTTGTTGATT GTGCCCGTGA CAAAAACATC CCTATCCGTA TCGGTGTAAA CGGCGGTTCT 
TTGGAAAAAG ATCTGCAGAT GAAATACGGT GAGCCAACGC CAGAGGCATT GGTCGAGTCG 
GCGATGCGTC ACGTGGATCA TCTAGACCGT CTTAACTTTG ACCAGTTCAA AGTCAGTGTG 
AAAGCGTCAG ATGTGTTCCT AGCGGTGGAT TCATACCGTC TATTGGCCAA ACAGATTGAC 
CAACCTTTGC ACCTTGGTAT CACCGAAGCG GGTGGTGCTC GCGCTGGTGC AGTGAAATCA 
TCGGTTGGTC TTGGTATGCT TTTGGCTGAA GGCATCGGTG ATACGCTGCG TATCTCGTTG 
GCGGCAGATC CGGTAGAAGA GATCAAAGTT GGCTTTGATA TTCTTAAGTC TCTGCGTATT 
CGCTCACGAG GTATCAACTT TATTGCTTGT CCAAGCTGTT CACGTCAGGA ATTCGACGTG 
ATCAATACAG TGAACGCACT AGAAGAGCGC CTAGAAGACA TCATCACACC TATGGATGTG 
TCTATCATCG GCTGTGTCGT AAACGGCCCT GGTGAAGCTG AGGTTTCACA CCTAGGCCTA 
GCTGGCAGCA ACAAGAAGAG CGCATTCTAC GAAGACGGCA AACGTCAGAA AGAGCGTTTC 
GACAACGATG ATCTAGTGAA CCAGCTAGAA GCGAAAATCC GTGCGAAAGC GTCTGTATTA 
GACCAAGCTA ACCGCATCGA TATCAAACAA GAAGATTAA
 
Protein sequence
MQHESPIIRR KSTRIYVGDV PIGDGAPIAV QSMTNTRTTD VEATVAQIRA LEKVGADIVR 
VSVPTMDAAE AFKLIKQQVS VPLVADIHFD YRIALKVAEY GVDCLRINPG NIGNEERIRS 
VVDCARDKNI PIRIGVNGGS LEKDLQMKYG EPTPEALVES AMRHVDHLDR LNFDQFKVSV 
KASDVFLAVD SYRLLAKQID QPLHLGITEA GGARAGAVKS SVGLGMLLAE GIGDTLRISL 
AADPVEEIKV GFDILKSLRI RSRGINFIAC PSCSRQEFDV INTVNALEER LEDIITPMDV 
SIIGCVVNGP GEAEVSHLGL AGSNKKSAFY EDGKRQKERF DNDDLVNQLE AKIRAKASVL 
DQANRIDIKQ ED