| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_01005 |
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| Symbol | rluD |
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| ID | 5554532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009783 |
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| Strand | + |
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| Start bp | 1015277 |
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| End bp | 1016254 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640906499 |
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| Product | 23S rRNA pseudouridine synthase D |
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| Protein accession | YP_001444231 |
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| Protein GI | 156973324 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCAGC AGATTGTTTT AACCAACACC GTAAAAGATA GCCAATTAGG TCAACGTTTA
GACCAAGCTA TCGCCGAATT ATTCGCGGAC TTCTCTCGCT CTCGCTTGAA AGAGTGGTTG
CTTGCAGGGA AAGTACAAGT GAATGGTGAA GTTGTCACTA AACCTCGCAC CAGAGTAATG
GGTGGCGAGG AAATTACCTT GCAAGCCGAG CTGGAAGATG AAGAACGCTG GGAAGCACAA
GATATCCCGC TAGATATCGT CTACGAAGAT GAAGACATCA TCGTAATCAA TAAGCCTCGT
GATTTTGTAG TACACCCTGG CGCGGGTACG CCAGACGGCA CAGTACTAAA CGCATTGCTG
CATCATTACC CAGATATCGC AGAAGTACCT CGTGCAGGTA TCGTGCACCG TCTGGATAAG
GACACTACAG GTCTAATGGT GGTCGCGAAA ACTGTTCCGG CACAAACTCG TCTAGTACGC
GCGCTGCAAA AACGTAACAT CACTCGTGAG TACGAAGCGA TTGCAATCGG TCGTATGACG
GCGGGCGGTA AAGTGGATAA ACCAATTGGT CGTCACTCTA CTAAACGTAC GCTAATGGCA
GTTGCTCCAA TGGGTAAACC TGCGGTAACG CACTACCGTG TTGCGGAGCA CTTCCGTGAA
CACACGCGTA TCCGTCTTCG CCTAGAAACC GGTCGTACGC ACCAAATCCG TGTTCATATG
TCTTACCTAC AGCATCCGCT ACTAGGTGAT ACTGCATACG GTGGCCGTGC TCGTATCCCA
ACTGGCGCTT CAGAAGAACT AACGGAAATG ATCCGTGGTT TTGACCGCCA AGCACTGCAC
GCGGTAATGC TGCGTTTCGA TCACCCTGTT ACTGGTGAAG AGCTAGAGTT TCACGCTCCA
GTACCGGATG ACATGGTAGA AATGACAGAA GCGCTACGTA AAGATACAGA AGAGTTCGGT
CTGCCTGACG AGTTCTAA
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| Protein sequence | MAQQIVLTNT VKDSQLGQRL DQAIAELFAD FSRSRLKEWL LAGKVQVNGE VVTKPRTRVM
GGEEITLQAE LEDEERWEAQ DIPLDIVYED EDIIVINKPR DFVVHPGAGT PDGTVLNALL
HHYPDIAEVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVR ALQKRNITRE YEAIAIGRMT
AGGKVDKPIG RHSTKRTLMA VAPMGKPAVT HYRVAEHFRE HTRIRLRLET GRTHQIRVHM
SYLQHPLLGD TAYGGRARIP TGASEELTEM IRGFDRQALH AVMLRFDHPV TGEELEFHAP
VPDDMVEMTE ALRKDTEEFG LPDEF
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