Gene VIBHAR_00981 details

Gene Information

• Locus tag: VIBHAR_00981
• Symbol: lspA
• ID: 5555976
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009783
• Strand: +
• Start bp: 989469
• End bp: 989975
• Gene Length: 507 bp
• Protein Length: 168 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640906475
• Product: lipoprotein signal peptidase
• Protein accession: YP_001444207
• Protein GI: 156973300
• COG category: [M] Cell wall/membrane/envelope biogenesis; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0597] Lipoprotein signal peptidase
• TIGRFAM ID: [TIGR00077] lipoprotein signal peptidase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGAAA AAGCACTGAC GTTAAAGCAA TCTGGAGTTC GCTGGCTATG GTTAGCAATT 
CTGGTATTTA TTGCCGATAT AGGCATCAAA TTGGTGGTAA TGGACAACAT GGGCTACGGA 
TGGGCAAACC GAATTGAGGT GCTGCCATTC TTCAACCTAC TTTATGTTCA TAACTACGGT 
GCAGCATTCA GCTTCTTGAG CGATCAAGCG GGCTGGCAAC GCTGGTTGTT CACCGGTATC 
GCGTTTGTTG TGACAGGTCT TTTGACTTAC TGGATGAGTA AGCTTCCAGC CAAAGAAAAA 
TGGAACAACA TCGCTTATGC ATTGATTATT GGTGGTGCAG TGGGCAACGT GTTTGACCGT 
GTGGTTCACG GCTTTGTTGT TGATTACCTT GACTTCTTCT GGGGCAGCTA TCACTGGCCA 
GCATTCAATC TAGCGGATAC GACTATCTGT ATTGGTGCGG CAATGATCAT TCTTGACGGC 
TTCCGCAAAA AGGATGCTAA CAAGTAA 

 

Protein sequence

MSEKALTLKQ SGVRWLWLAI LVFIADIGIK LVVMDNMGYG WANRIEVLPF FNLLYVHNYG 
AAFSFLSDQA GWQRWLFTGI AFVVTGLLTY WMSKLPAKEK WNNIAYALII GGAVGNVFDR 
VVHGFVVDYL DFFWGSYHWP AFNLADTTIC IGAAMIILDG FRKKDANK