Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_00869 |
Symbol | tolC |
ID | 5554288 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009783 |
Strand | - |
Start bp | 860837 |
End bp | 862174 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640906363 |
Product | outer membrane channel protein |
Protein accession | YP_001444096 |
Protein GI | 156973189 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAC TGCTTCCACT ATTTATCAGT GCAGCGCTAG GCAGTATGAG CACATCAGCA TGGGCAGACT CTCTTGCTGA AATCTATGAC TTAGCAAAAC AAAACGACCC TCAATTGCTC AGTGTAGCAG CGCAGCGTGA TCAAGCTTTT GAAGCAATCA ACTCTAGCCG CAGTGCCCTA CTACCACAAA TCAACTTAAC TGCGGGTTAC GACATCGCTC GTGGTGAGAC TGACTACGAC AAAAACACAC CAGTCTTCAG AGAAGACCGC GATAACGACC AAAATGTTCT TTCTGCTGGT GTTGGATTCT CGCAAGAGCT ATACAACCGT GCATCTTGGA TCACTTTAGA TACCGCAGAG AAAACGGCTC GTCGTGCGGA TGCAACATAC GCCGCAACAC AACAAGGTTT GATCCTTCGA GTTTCTCAAG CTTACTTTGA AGTACTACGT GCACAAGATA ACTTAGTATT TGTTCGTGCA GAAAAAGCAG CGGTTGGCCG TCAGCTTGAA CAAACTAAGC AACGTTTTGA AGTAGGTCTA TCAGCCATCA CTGACGTACA CGATGCGCAA GCACAGTACG ATGCAGTACT AGCCGATGAA GTATTAGCAG AAAACGATCT GATCAACAGC TACGAATCGC TACGTGAAAT CACAGGCCAA GAGCACAAGA ACCTAAACGT TCTGGATACA GCGCGTTTCT CTGCAAGCCG CTCTTCTGAA TCAGCAGAAA CATTGATTGA AGAAGCGAAG ACAACCAACC TGAGTCTACT GTCTGCGCGT ATCGCACAAG ACATCGCTCG CGATAACATT TCGCTAGCGA GCTCTGGTCA CCTACCGACG CTATCTCTAG ACGGTGGTTA CAACTACTCC GACACAGCAG AAAGTACAGC AGATAACACA ACCGACGGCT TCAATGTTGG CGTGAACCTA GCTGTGCCGC TATACACAGG TGGTCGTACA ACGTCTGAAG TGAAACAAGC AGAATACGGC TATGTGTCAG CAAGTGAAGA ACTAGAGAAA GAATACCGTA GTGTTGTGAA AGAAGTGCGT GCACAGAACA ACAACATCAA CGCTTCTATC GGCGCACTAA AAGCGTACGA GCAATCTGTA GTGTCAGCAC AATCTGCCCT TGAGGCAACA GAAGCAGGCT TCGATGTAGG TACTCGTACT ATCGTTGATG TACTAGACGC AACTCGTCGT CTATACGATG CGAACAAGAA CCTATCAGAC GCACGTTACA ACTACATCCT TGCAGGCCTA CAGCTTCGTC AAGCGGTAGG TACATTGAGC GAGCAAGATA TCCTAGATGT GGATGCAGGC CTTAAGCCAG CAAAATAA
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Protein sequence | MKKLLPLFIS AALGSMSTSA WADSLAEIYD LAKQNDPQLL SVAAQRDQAF EAINSSRSAL LPQINLTAGY DIARGETDYD KNTPVFREDR DNDQNVLSAG VGFSQELYNR ASWITLDTAE KTARRADATY AATQQGLILR VSQAYFEVLR AQDNLVFVRA EKAAVGRQLE QTKQRFEVGL SAITDVHDAQ AQYDAVLADE VLAENDLINS YESLREITGQ EHKNLNVLDT ARFSASRSSE SAETLIEEAK TTNLSLLSAR IAQDIARDNI SLASSGHLPT LSLDGGYNYS DTAESTADNT TDGFNVGVNL AVPLYTGGRT TSEVKQAEYG YVSASEELEK EYRSVVKEVR AQNNNINASI GALKAYEQSV VSAQSALEAT EAGFDVGTRT IVDVLDATRR LYDANKNLSD ARYNYILAGL QLRQAVGTLS EQDILDVDAG LKPAK
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