Gene VIBHAR_00869 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_00869 
SymboltolC 
ID5554288 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand
Start bp860837 
End bp862174 
Gene Length1338 bp 
Protein Length445 aa 
Translation table11 
GC content47% 
IMG OID640906363 
Productouter membrane channel protein 
Protein accessionYP_001444096 
Protein GI156973189 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAC TGCTTCCACT ATTTATCAGT GCAGCGCTAG GCAGTATGAG CACATCAGCA 
TGGGCAGACT CTCTTGCTGA AATCTATGAC TTAGCAAAAC AAAACGACCC TCAATTGCTC
AGTGTAGCAG CGCAGCGTGA TCAAGCTTTT GAAGCAATCA ACTCTAGCCG CAGTGCCCTA
CTACCACAAA TCAACTTAAC TGCGGGTTAC GACATCGCTC GTGGTGAGAC TGACTACGAC
AAAAACACAC CAGTCTTCAG AGAAGACCGC GATAACGACC AAAATGTTCT TTCTGCTGGT
GTTGGATTCT CGCAAGAGCT ATACAACCGT GCATCTTGGA TCACTTTAGA TACCGCAGAG
AAAACGGCTC GTCGTGCGGA TGCAACATAC GCCGCAACAC AACAAGGTTT GATCCTTCGA
GTTTCTCAAG CTTACTTTGA AGTACTACGT GCACAAGATA ACTTAGTATT TGTTCGTGCA
GAAAAAGCAG CGGTTGGCCG TCAGCTTGAA CAAACTAAGC AACGTTTTGA AGTAGGTCTA
TCAGCCATCA CTGACGTACA CGATGCGCAA GCACAGTACG ATGCAGTACT AGCCGATGAA
GTATTAGCAG AAAACGATCT GATCAACAGC TACGAATCGC TACGTGAAAT CACAGGCCAA
GAGCACAAGA ACCTAAACGT TCTGGATACA GCGCGTTTCT CTGCAAGCCG CTCTTCTGAA
TCAGCAGAAA CATTGATTGA AGAAGCGAAG ACAACCAACC TGAGTCTACT GTCTGCGCGT
ATCGCACAAG ACATCGCTCG CGATAACATT TCGCTAGCGA GCTCTGGTCA CCTACCGACG
CTATCTCTAG ACGGTGGTTA CAACTACTCC GACACAGCAG AAAGTACAGC AGATAACACA
ACCGACGGCT TCAATGTTGG CGTGAACCTA GCTGTGCCGC TATACACAGG TGGTCGTACA
ACGTCTGAAG TGAAACAAGC AGAATACGGC TATGTGTCAG CAAGTGAAGA ACTAGAGAAA
GAATACCGTA GTGTTGTGAA AGAAGTGCGT GCACAGAACA ACAACATCAA CGCTTCTATC
GGCGCACTAA AAGCGTACGA GCAATCTGTA GTGTCAGCAC AATCTGCCCT TGAGGCAACA
GAAGCAGGCT TCGATGTAGG TACTCGTACT ATCGTTGATG TACTAGACGC AACTCGTCGT
CTATACGATG CGAACAAGAA CCTATCAGAC GCACGTTACA ACTACATCCT TGCAGGCCTA
CAGCTTCGTC AAGCGGTAGG TACATTGAGC GAGCAAGATA TCCTAGATGT GGATGCAGGC
CTTAAGCCAG CAAAATAA
 
Protein sequence
MKKLLPLFIS AALGSMSTSA WADSLAEIYD LAKQNDPQLL SVAAQRDQAF EAINSSRSAL 
LPQINLTAGY DIARGETDYD KNTPVFREDR DNDQNVLSAG VGFSQELYNR ASWITLDTAE
KTARRADATY AATQQGLILR VSQAYFEVLR AQDNLVFVRA EKAAVGRQLE QTKQRFEVGL
SAITDVHDAQ AQYDAVLADE VLAENDLINS YESLREITGQ EHKNLNVLDT ARFSASRSSE
SAETLIEEAK TTNLSLLSAR IAQDIARDNI SLASSGHLPT LSLDGGYNYS DTAESTADNT
TDGFNVGVNL AVPLYTGGRT TSEVKQAEYG YVSASEELEK EYRSVVKEVR AQNNNINASI
GALKAYEQSV VSAQSALEAT EAGFDVGTRT IVDVLDATRR LYDANKNLSD ARYNYILAGL
QLRQAVGTLS EQDILDVDAG LKPAK