Gene VIBHAR_00764 details

Gene Information

• Locus tag: VIBHAR_00764
• Symbol: cpdB
• ID: 5555543
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009783
• Strand: -
• Start bp: 743445
• End bp: 745406
• Gene Length: 1962 bp
• Protein Length: 653 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640906258
• Product: bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
• Protein accession: YP_001443992
• Protein GI: 156973085
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
• TIGRFAM ID: [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATGG CAGTTAATCC CGTATCCGTC GCAGTTTTAA GCGGTATGTT GACGCTTGCA 
GGTCCAGCAA TGGCGGACAC TATTAAGCTA CGTATTATCG AAACCACCGA CATTCACACT 
AATGTGATGG ATTACGACTA CTACAAAGAT CAGCCTTCTC AACAAATCGG TCTTAGCCGT 
GCAGCTACAC TGGTTAAGCA AGCTCGTGAA GAAGCAGTGA ACAGTGTTTT GGTCGACAAT 
GGCGACTTGA TTCAAGGCAG TCCGATGGGC GATTACATGG CAGCGAAAGG GATTAACGCT 
GGCGAAATCC ACCCGGTGTA CAAAGCGATG AACCAGTTGG ATTACGATGT AGGTAATATT 
GGTAACCACG AATTCAACTA CGGCCTTGAG TTCCTGAAAA ACTCTATCAA CGGTGCGAAT 
TTCCCTTATG TTAGTGCTAA CGTTTTCGAC AAGAAGACAG GCGAGCACTA CTTCAAACCT 
TATCTAATTA AAACGCACAC GTTCAAAGAC ACTGATGGTC AAAGCCACGA AATCAAAGTG 
GGTTACATCG GCTTCGTCCC GCCACAAATC ATGGTATGGG ATAAGAAGAA TCTAGAAGGT 
AAAGTCTTCG CTGAAGACAT CACTGAGACA GCGAAAAAGC TGGTTCCTCA GATGAAGAAA 
GAAGGCGCAG ACGTGATTGT GGCGATTCCA CACTCAGGCA TTTCGACTGA CCCATACAAG 
CTCGGCGCTG AAAACTCGGT TTACTACCTC ACAGAAGTTG AAGGTATTGA TGCGATTGCA 
TTTGGTCACT CTCACGCGGT ATTCCCGGGT AAAGACTTTG CCAAGCTGCA AGGTGTCGAC 
AACGCAAAAG GCACAATTAA TGGCGTAACC GCAGTCATGC CAGGTCGCTG GGGTAGCCAC 
GTTGGCGTAA TGGACTTGAT GCTGAAAGAA AAAGACGGCA AGTGGCAAGT GGTTGAAGGT 
CAATCTGAAG CGCGCCCTAT CTTCGATAAA GCCAACAAGA AATCTTTGGC CGAAGCTGAT 
AAAGGCATCG TGGATGCACT TGTTGATGAC CACAAAGGCA CACGTGAATT CGTCAACCAA 
CCAATTGGCA AAGCAAATGA CGTGATGTAC AGCTTCATAG CGCTTGTACA AGATGATCCA 
ACGATTCAAA TCGTAAACCT AGCGCAGAAA GATTACGTGG AACGCTTTAT CCAAGGCGAC 
CCAGATCTTG CAGACATTCC AGTACTAAGC GCAGCGGCAC CATTTAAAGT GGGCGGACGT 
AAAGACGATC CAAATGGCTT CACGGAAGTA GAGTCCGGCC AGCTGACTTT CCGTAATGCC 
GCGGATCTTT ACTTATACCC GAATACGCTG GTAGCAATGA AGGTTAAAGG CAAAGAAGTT 
CACGAATGGC TAGAGTGTAG CGCGGGTCAG TTCAATCATA TTGATGTTAA CAGCACCCAA 
CCTCAGTCTT TGATCAACTG GGATAACTAC CGTACTTACA ATTTCGACGT GATTGATGGT 
GTGAACTACC AAATCGATGT TACTCAACCG CCGAAGTACG ATGCGGATTG TAAAGTGATC 
AACCCAGATT CAAAGCGTAT CGTGAACCTG ACTTACAACG GTAAGCCAGT AGATCCAAAA 
CAAGACTTCA TCATTGCAAC CAACAACTAC CGTGCTTACA GCGCAACCTT CCCAGGCACT 
GGTCCGGACT TCATCGCGTT TGATGCTCCA GATGAGAACC GCTCTGTAGT GGCCGCTTAC 
ATCTCTCGCA TCAGTAAAGA GCAAGGCGAA GTGACACCAA GCGCGGATAA CAACTGGTCT 
TTCGCACCAA TCAAATCGGA TAACAAACTT GATGTTCGTT TTGAAACCTC ACCAAGTGAT 
AAAGCTGCGC AGTTCATCAA AGAGAAAGGG CAGTACCCGA TGAAACGTGT CGCAACTGAC 
GAAGTTGGTT TCGCGATTTA CCAAATTGAC CTGAATAAGT AA 

 

Protein sequence

MKMAVNPVSV AVLSGMLTLA GPAMADTIKL RIIETTDIHT NVMDYDYYKD QPSQQIGLSR 
AATLVKQARE EAVNSVLVDN GDLIQGSPMG DYMAAKGINA GEIHPVYKAM NQLDYDVGNI 
GNHEFNYGLE FLKNSINGAN FPYVSANVFD KKTGEHYFKP YLIKTHTFKD TDGQSHEIKV 
GYIGFVPPQI MVWDKKNLEG KVFAEDITET AKKLVPQMKK EGADVIVAIP HSGISTDPYK 
LGAENSVYYL TEVEGIDAIA FGHSHAVFPG KDFAKLQGVD NAKGTINGVT AVMPGRWGSH 
VGVMDLMLKE KDGKWQVVEG QSEARPIFDK ANKKSLAEAD KGIVDALVDD HKGTREFVNQ 
PIGKANDVMY SFIALVQDDP TIQIVNLAQK DYVERFIQGD PDLADIPVLS AAAPFKVGGR 
KDDPNGFTEV ESGQLTFRNA ADLYLYPNTL VAMKVKGKEV HEWLECSAGQ FNHIDVNSTQ 
PQSLINWDNY RTYNFDVIDG VNYQIDVTQP PKYDADCKVI NPDSKRIVNL TYNGKPVDPK 
QDFIIATNNY RAYSATFPGT GPDFIAFDAP DENRSVVAAY ISRISKEQGE VTPSADNNWS 
FAPIKSDNKL DVRFETSPSD KAAQFIKEKG QYPMKRVATD EVGFAIYQID LNK