| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00627 |
|---|
| Symbol | |
|---|
| ID | 5554804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | - |
|---|
| Start bp | 616263 |
|---|
| End bp | 618383 |
|---|
| Gene Length | 2121 bp |
|---|
| Protein Length | 706 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640906122 |
|---|
| Product | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase |
|---|
| Protein accession | YP_001443856 |
|---|
| Protein GI | 156972949 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTATCTAT TCGATAGCCT CAAAGACGTT GCCCAAGAAT ACCTAACAGA GCCTCAAATT
GAGGCTCTGC GTCAATCTTA TGTGGTAGCA AGAGATGCCC ATGAAGGGCA AACCCGCTCA
AGCGGTGAAC CATACATCAT CCACCCAGTC GCTGTGGCTC GAATATTGGC CGAAATGCGC
CTCGATATCG AAACCCTCCA AGCTGCTTTG CTGCATGACG TCATCGAAGA CTGTGACGTT
ACAAAAGAAG ATCTCGAAGA GAAATTCGGC AATACCGTCG CTGAGCTGGT TGATGGTGTA
TCTAAACTGG ACAAACTCAA ATTCCGCGAT AGGAAAGAGG CTCAAGCCGA GAACTTCCGT
AAGATGGTTC TGGCGATGGT GCAAGACATC CGCGTTATCC TGATCAAACT GGCTGACCGT
ACGCACAACA TGCGCACGTT AGGTGCCCTG CGCCCCGACA AAAAACGCCG TATTGCTCGC
GAAACCCTGG AAATCTATGC GCCACTGGCT CACCGTCTTG GTATTCACAA TATCAAAACG
GAGCTTGAGG AGCTTGGCTT CGAAGCGCTT TACCCGAACC GCTACCGCGT TCTAAAAGAA
GTGGTAAGAG CGGCGCGTGG TAATCGTAAA GAGATGATCC AACGTATTCA CAGCGAAATT
GAAGGTCGAC TCGAAGATGT TGGCTTGAAT GCGCGCGTGT TAGGTCGTGA AAAAAACCTG
TTCTCCATCT ACAACAAGAT GAAAACCAAA GAACAGCGTT TCCACACCAT CATGGATATC
TACGCTTTCC GAGTGGTTGT TGATACTGCC GATACTTGTT ATCGCGTTCT AGGCCAAGTG
CACAGCTTGT ATAAGCCCCG TCCTGGTCGC ATGAAAGATT ACATTGCGGT ACCGAAAGCG
AACGGCTACC AATCGCTGCA TACTTCTATG GTTGGCCCTC ATGGCGTACC AGTTGAAGTT
CAGATCCGTA CCGAAGATAT GGATCAAATG GCGGACAAAG GTGTCGCTGC ACACTGGTCA
TACAAAGACA AGGGCGACAA GTCTGGCACA ACAGCGCAAG TGAAAGCTCA GCGTTGGATG
CAAAGCCTGC TTGAGCTACA ACAAAGCGCT GGTAACTCAT TCGAATTCAT TGAAAACGTA
AAATCGGATC TTTTCCCAGA TGAGATTTAC GTCTTCACAC CAAAAGGTCG TATCGTTGAA
TTGCCATTAG GCGCAACGGC TGTCGACTTT GCTTATGCCG TACATACTGA TGTCGGTAAC
TCTTGTGTTG GTGCTCGCGT TGACCGTAAC CCGTACCCAC TAAGTAAGGC ACTAAAGAAC
GGTCAGACAG TAGAAATCAT CAGTGCACCA GGTGCGCGTC CAAACGCAGC TTGGTTGAAC
TATGTCGTGA CTTCTCGCGC TCGCACTAAG ATTCGTCAAG TATTGAAGAC CATGCGTCGT
GAAGAGTCGA TTACCTTAGG TCGTCGTCTA CTGAATCACG CTTTGGGTCG TCATTCGATT
GATTCAATCT ACCCAGAAAA CATCCAAGAA GTGCTGACTG ATCTGCGCCT AGAAAGCGTC
GATGATCTGC TAGCAGCCAT TGGTTTGGGT GAGTTGATGA GTATCGTCAT CGCACGTCGC
TTATTGGGTG ACACTGATGA ATTGACCACC ACAAGCTCGA TTCCAAACGA ATCTAACAAG
AAGCTGCCAA TCCGTGGTGC AGAAGGCCTG CTACTGACTT TCGCAAATTG TTGTCACCCT
ATTCCGGATG ACCACATCAT TGCTCACGTA TCACCAGGTC GTGGTCTTGT GGTTCACCGT
GAAACGTGTC CAAACGTACG TGGATACCAG AAAGAACCAG ACAAATACAT GGTAGTCGCT
TGGTCTGAAG AGTACGACAA AGAGTTCATT GCTGAACTGA AAGTCGATAT GCTCAACAAC
CAAGGTGCGT TAGCGGAATT GACCAATGTG ATTTCGAAAA CTGGTTCGAA CATTCACGGT
CTCTCAACCG AAGAACGCGA TGGTCGCTTG TACACCGTTA CCGTTCTGCT AACCACCAAA
GATCGTGTTC ACCTTGCTGG CATCATGCGT AAGATTAAGA CCATGCCACA GGCGACTCGA
GTCAGACGAA GAAAGAACTA A
|
|---|
| Protein sequence | MYLFDSLKDV AQEYLTEPQI EALRQSYVVA RDAHEGQTRS SGEPYIIHPV AVARILAEMR
LDIETLQAAL LHDVIEDCDV TKEDLEEKFG NTVAELVDGV SKLDKLKFRD RKEAQAENFR
KMVLAMVQDI RVILIKLADR THNMRTLGAL RPDKKRRIAR ETLEIYAPLA HRLGIHNIKT
ELEELGFEAL YPNRYRVLKE VVRAARGNRK EMIQRIHSEI EGRLEDVGLN ARVLGREKNL
FSIYNKMKTK EQRFHTIMDI YAFRVVVDTA DTCYRVLGQV HSLYKPRPGR MKDYIAVPKA
NGYQSLHTSM VGPHGVPVEV QIRTEDMDQM ADKGVAAHWS YKDKGDKSGT TAQVKAQRWM
QSLLELQQSA GNSFEFIENV KSDLFPDEIY VFTPKGRIVE LPLGATAVDF AYAVHTDVGN
SCVGARVDRN PYPLSKALKN GQTVEIISAP GARPNAAWLN YVVTSRARTK IRQVLKTMRR
EESITLGRRL LNHALGRHSI DSIYPENIQE VLTDLRLESV DDLLAAIGLG ELMSIVIARR
LLGDTDELTT TSSIPNESNK KLPIRGAEGL LLTFANCCHP IPDDHIIAHV SPGRGLVVHR
ETCPNVRGYQ KEPDKYMVVA WSEEYDKEFI AELKVDMLNN QGALAELTNV ISKTGSNIHG
LSTEERDGRL YTVTVLLTTK DRVHLAGIMR KIKTMPQATR VRRRKN
|
|---|
| |