| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00601 |
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| Symbol | |
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| ID | 5554569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009783 |
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| Strand | + |
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| Start bp | 586462 |
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| End bp | 588438 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640906096 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001443830 |
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| Protein GI | 156972923 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAACG AGTTTAGTGC CAGCTTCAAA GGCACTGATA TTCAAGAATT CATCAATATT
GTTGGTCGCA ATCTAGAGAA GACCATCATC GTTGACCCGT CTGTGCGCGG TAAGATTGAC
GTACGTAGTT ACGACGTTCT TAACGAAAAG CAGTACTACA GCTTCTTCTT GAACGTTCTT
GAAGTGTATG GTTATGCCGT TGTCGAAATG GACAATGGTG TGTTGAAAGT CATCAAAGCG
AAAGATTCAA AAACGTCAGC AATCCCGGTT TTGGGTGATG ACAGTGCGCA AGGCGACAGC
GTGATTACCC GTGTGGTTGC GGTGCGTAAT GTGTCGGTTC GTGAACTTTC TCCGCTACTG
CGTCAACTGA TTGATAACGC AGGTGCCGGT AACGTGGTGC ACTACGATCC AGCTAACATC
ATCTTGATCA CGGGTCGTGC TGCGGTAGTA AACCGCCTAG CGGAAATCAT TAAGCGCGTT
GACCAAGCGG GTGACAAAGA AATCGAAGTC GTAGAGCTGC GCAATGCGTC TGCTTCTGAG
ATGGTGCGTA TCGTTGATGC CCTGAACAAA ACGACCAACC AAAAGAGCAC ACCTGAATTC
CTAGAGCCAA AAATCGTAGC GGATGATCGT ACTAACTCCA TCCTGATTTC TGGTGATCCT
AAAGTTCGTG CGCGCCTGAA GCGTTTGATT CGTCAACTTG ACGTTGAAAT GGCGACCAAA
GGCAATAACC GCGTGGTTTA CCTAAAGTAC GCGAAAGCGG AAGACCTAGT TGATGTACTA
AAAGGCGTAT CTGACAACTT ACAGGCTGAG AAGCAAGCAG GTCAAAACGG CGCATCAAGT
GCACAGCGTG GTGAAGTGGT GATTGCCGCT CACGAAGCAA CCAACTCGCT CGTTTTGACT
GCGCAGCCAG ATATCATGAT GGCGCTACAA GACGTGATTT CTCAACTGGA TATCCGTCGT
GCACAAGTTC TGATTGAAGC GTTGATCGTT GAAATGTCTG AAGGCGACGG CATCAACCTT
GGCGTTCAAT GGGGTAACTT AGATACAGGT GCGGTAATCC AATACGGCAA CACTGGCGCA
CAAATCGGTA ATGTCATGGT TGGTCTTGAA GAAGCGAAAG ATACAACGAA GACTGAGAGC
TATTGGGATG AAGATGCTAA TGGCGGAAGT GGTGATTGGA ATACTCGTGA ATATATCGAA
GAAGGTGATT ACTCGACACT AGCCGCTGCA CTTGGTGGTG TTAATGGTGC AGCAATGAGC
ATCATGATGG GTGACTGGAC TGCATTGATT ACTGCTGTGT CATCGGATTC AAACTCAAAC
ATCCTATCTT CTCCAAGCAT TACAGTGATG GATAATGGCG AAGCGTCCTT CATCGTTGGT
GAAGAAGTGC CTGTGATTAC AGGCTCGACA TCCGGGTCGA ATAACGACAA CCCATTCCAA
ACGGTTGACC GTAAAGAAGT CGGTATCAAA CTTAAAGTTG TGCCTCAAAT CAACGAAGGT
GACTCAGTAC AACTGACTAT TGAGCAGGAA GTGTCAAACG TTCTGGGTGC AAATGGTGCG
GTGGACGTGC GTTTCGCGAA GCGTCAGTTG AATACCTCTG TGATGATTCA AGATGGTCAG
ATGCTAGTTC TGGGCGGTTT GGTTGATGAG CGTGCGTTAG AAAGTGAATC GAAAGTGCCG
CTACTGGGTG ATATTCCTGT CATTGGTCAA CTGTTCAAGT CGACTAGCAC GCAAACAGAA
AAACGTAACC TGATGGTGTT TATCAAGCCA ACCATCATCC GCGATGGTAT GACGGCTGAT
GGTATCACTC AGCGTAAGTA CAACTTCATT CGTGCAGAGC AGCTTTATAA AGCGCAAGAA
GGCTTGAAGC TGATGGATGA TTCAAAAGTT CCACTAATGC CTGAATTTGG TGAAGAGCGT
AAACACCCTG CTGAAATTCA AGCGTTCATC GATCAGATGG TAAAGAATGA TGGTTGA
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| Protein sequence | MANEFSASFK GTDIQEFINI VGRNLEKTII VDPSVRGKID VRSYDVLNEK QYYSFFLNVL
EVYGYAVVEM DNGVLKVIKA KDSKTSAIPV LGDDSAQGDS VITRVVAVRN VSVRELSPLL
RQLIDNAGAG NVVHYDPANI ILITGRAAVV NRLAEIIKRV DQAGDKEIEV VELRNASASE
MVRIVDALNK TTNQKSTPEF LEPKIVADDR TNSILISGDP KVRARLKRLI RQLDVEMATK
GNNRVVYLKY AKAEDLVDVL KGVSDNLQAE KQAGQNGASS AQRGEVVIAA HEATNSLVLT
AQPDIMMALQ DVISQLDIRR AQVLIEALIV EMSEGDGINL GVQWGNLDTG AVIQYGNTGA
QIGNVMVGLE EAKDTTKTES YWDEDANGGS GDWNTREYIE EGDYSTLAAA LGGVNGAAMS
IMMGDWTALI TAVSSDSNSN ILSSPSITVM DNGEASFIVG EEVPVITGST SGSNNDNPFQ
TVDRKEVGIK LKVVPQINEG DSVQLTIEQE VSNVLGANGA VDVRFAKRQL NTSVMIQDGQ
MLVLGGLVDE RALESESKVP LLGDIPVIGQ LFKSTSTQTE KRNLMVFIKP TIIRDGMTAD
GITQRKYNFI RAEQLYKAQE GLKLMDDSKV PLMPEFGEER KHPAEIQAFI DQMVKNDG
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