| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00583 |
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| Symbol | |
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| ID | 5554439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009783 |
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| Strand | - |
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| Start bp | 564616 |
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| End bp | 567162 |
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| Gene Length | 2547 bp |
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| Protein Length | 848 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640906078 |
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| Product | cyclic diguanylate phosphodiesterase |
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| Protein accession | YP_001443812 |
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| Protein GI | 156972905 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAACG CGACGACTCA AATTACACTA CGTACTGCTG TTCTCATCCC TTTCGTGATG
ATTTTTCTGC TGGCTATCGG TGTGATTGTC TACGTCCAAA AACAGAGCTA TGAGGAAGTT
GTCACCGACA TCAGTGGTAA GCAACTTTCA GTATTGACCG AAAGTGTTCA CGACCACCTC
AATGACTACC TGCGTAAACC TTTCACCGCA GTCAATGCGC TGGGGCACAA CGTTAGCTAC
CACAACTTAT ATCATCCTAA CGACACCAAA GATATCCAAG CTTATTTGTT GAGTGCATTT
AAAGATTTGT ACCACTCAAT ACCGCAGCTG GATGTGATTG CATTTGGATC TGAATCCGGT
GACTTTACCG GCTTCCGACG CGAAGCGGGT GACAGCTACA CGCTGATGGT TCAAGACCAT
CGTACTGATG GTAATTTGGT TATTTACGGC AGTGAAGACG TCAGTGATGA TATTCGTACT
GTGATTGCTC CGTACGACCC TCGCACCCGC CCTTGGTATC AGCCCGTCGC TCAAGACCAC
AGAGCCCGTT GGTCACCGAT TTACGCCAAT GCCGATGAGT GCCAAGACAT CACCCTTTCG
GCCATGACTC CCATTTACGA GCTTGGTGAG TTTGCAGGAG TCCTCGTTAC CGACATTCGC
ATCAACACCT TTAACTTGTT CTTACAAGAT CTCAAGCGAG ATACCAGTGC ATCCGTTTAC
ATCATGGATC AGGAACACCG CTTAGTGGCG CATTCAGGGC AAGGCAGTGT GATTTCTTGG
GGAACGAAGT TCTCAGAAAA GGGACAGCGT TTACTGGCTT CGGAAAGTGC AGATCCTATC
ATCCAAATGA GTGCGTCTCG CCTAATGGGC CAAGACCTCA GCCACAGCGA CAAACCTTAC
ACATTCGAGT TCGACTTCAA CGGTCAACGC ACCTTTAGCC GTATCACGCC ATATCATGAC
GCCAATGGCT TAACTTGGTT TATTGGCACT TCGGTTTCTG AAACCGATCT ACTCGGCAAC
CTGCCCAATA GCCAACAGAA AAGTTGGATG GTCGGTGCCT TGGTGAGCTT ATTTGGTATT
GGGATTAGCC TACTGATATT CAATCGCGTT ACTCGCCCTA TCAATGCCAC GGCAACAGCG
GCGCAGCACT TAGCCAAAGG GGATTGGGAT AGCACCATGC CTAAGCCGGG CTACGTGTAC
GAAACTACCG TCCTGGTACA AGCCTTTAAT GAAATGAAGG GAAATCTAAA AGCCTCATTT
AAAGCGCTAC GTGAACAGCT TGAATTTGAT TCTCTTACGC GCTTATACAG TCGCCAAGGT
TTGATAGAAG TGAGCGAAAC GTTGACTCAT TCAGGCCAAG GTAGTTTGTA TCTTATTGGG
ATCAACAAAT TTAGGGATAT CAACGACAGT ATCGGCCATC ACAAGGGCGA TCAGTTGCTG
ATTCATATTG CCGAGCGACT CAAACAGCAA CTTCATGATG AAGCGACACT CGCTCGAATT
GGTGGTGATG AATTTGCGGT ATTCATGCCA ACGACACACT CAGATGAAGA CATCAGTTTA
ATGGAGCGAC GCCTACAACA GCTGCTGGCA GCGCCATTCA TTCTTGATGG TGAAACCGTT
GTCGTCAAAA TTTCTGTTGG TGTCGTTCGC ACACAACCAG AGCAAACCAT GTCGTTATGG
CTGCGTAACG CTAGTATTGC GCTCAGCTAT GCCAAACAAG ATTCCCGTAC CAGCGTTTGC
CATTACAGCC CTGAAATGGC GAGTGCTTCT AAGTTCAGAA CTCAGATGCT GGCGAAAATC
CAGACGGGTA TTGATAACCG AGAGTTTGTG CCTTTCTATC AGCCGATCAT TGACCTTGCG
ACGGGGAACA TTTGTGGCGC GGAGGCATTG GCTCGCTGGC ACAGTGAATC AGGCATGATT
TCACCACTCG ACTTCATCCC TATCGCAGAA GAAAGCGGCA TGATCAAAAC CATTGGTCAA
CAAATCCTTT TCCAAGCTTG TAGTGACACT CGTAAAGCCA TCGATAATAA GCAATGGCCT
GAAGACTTCC AGCTACACGT CAATGTGTCC GTTCATCAGT TATCGAGCCC TAACTTCGTC
GAATCTGTCG CGAAAATACT GCTTAAAACA GGTCTATCGG CAACTAACGT AACATTAGAG
ATCACCGAGT CGCGTATCAT TGATAGCGCA CCAACCACGC TAGATAACTT AATCAAGCTC
AGAGATATGG GGCTGGGTAT TGGGATTGAC GATTTCGGTA CGGGTTACTC GTCACTCGCC
TACTTGCATG CTCTGCCATT CACCTGCTTG AAGATAGATC GCACCTTCAT TAACCGTCTG
ACCAAAGAGA ATCTCGACAG CTCAGTGGTA GCGGCGATCA TCAATATCAC GAAAGGTATG
AAAGCGAATG TGGTCGCGGA AGGAGTAGAA ACCGCAGTAC AAGCACAACT GCTCCGTTCA
CTTGGCTGTG ACCAAGTTCA AGGCTTCTAC TATAGCCGCC AAATGGCGAT GGAAGAATGG
CCAACACATT TGGTTAACAT GAAGTAG
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| Protein sequence | MSNATTQITL RTAVLIPFVM IFLLAIGVIV YVQKQSYEEV VTDISGKQLS VLTESVHDHL
NDYLRKPFTA VNALGHNVSY HNLYHPNDTK DIQAYLLSAF KDLYHSIPQL DVIAFGSESG
DFTGFRREAG DSYTLMVQDH RTDGNLVIYG SEDVSDDIRT VIAPYDPRTR PWYQPVAQDH
RARWSPIYAN ADECQDITLS AMTPIYELGE FAGVLVTDIR INTFNLFLQD LKRDTSASVY
IMDQEHRLVA HSGQGSVISW GTKFSEKGQR LLASESADPI IQMSASRLMG QDLSHSDKPY
TFEFDFNGQR TFSRITPYHD ANGLTWFIGT SVSETDLLGN LPNSQQKSWM VGALVSLFGI
GISLLIFNRV TRPINATATA AQHLAKGDWD STMPKPGYVY ETTVLVQAFN EMKGNLKASF
KALREQLEFD SLTRLYSRQG LIEVSETLTH SGQGSLYLIG INKFRDINDS IGHHKGDQLL
IHIAERLKQQ LHDEATLARI GGDEFAVFMP TTHSDEDISL MERRLQQLLA APFILDGETV
VVKISVGVVR TQPEQTMSLW LRNASIALSY AKQDSRTSVC HYSPEMASAS KFRTQMLAKI
QTGIDNREFV PFYQPIIDLA TGNICGAEAL ARWHSESGMI SPLDFIPIAE ESGMIKTIGQ
QILFQACSDT RKAIDNKQWP EDFQLHVNVS VHQLSSPNFV ESVAKILLKT GLSATNVTLE
ITESRIIDSA PTTLDNLIKL RDMGLGIGID DFGTGYSSLA YLHALPFTCL KIDRTFINRL
TKENLDSSVV AAIINITKGM KANVVAEGVE TAVQAQLLRS LGCDQVQGFY YSRQMAMEEW
PTHLVNMK
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