Gene VIBHAR_00559 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_00559 
Symbol 
ID5554239 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand
Start bp540690 
End bp543137 
Gene Length2448 bp 
Protein Length815 aa 
Translation table11 
GC content49% 
IMG OID640906054 
Productsignal transduction protein 
Protein accessionYP_001443789 
Protein GI156972882 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTCGCT TCGCTATCTC CCCTGCATTG ATGACTGACT GGAAACAGGC TCTGCAACAA 
TGCTGTGATG CCACACAGGC GCACGGTCAG CTTTATACGT TCAGCTACAC TCGCCAATGG
CGTTTGAGTG AGGTAGCCAC ATCGCCGCAG CATCATCGTG AAGTTGTCGC GATTCTCGAT
CCTGCCACTG AGTGCTTTAC CTATCCTCAA CTCGTTGTTG AACAAACGCC CTTTCAAAGC
CAAACCTTGA GTTACTGCCC GGTATGGCTG CCGAGTGGTG AGCTATTTGC TGCGCTCGCA
TTGGTTCATC CAACTGAGCA AAATACTGTT ATTTCTGGGT GGTTAAGCGC ATTAGCGGGA
CGTATCGGCT TTGATGTTGC TCAGATTTAT CATAAAGAGC AGAAGCGCCA CGATGTTCAA
TTGCCAGAGT TACTGCCATC ACTGCAAGAG TTTATCGACT GCTTAGAAGA CCACACGTGG
ATAAAAAGTA CCGATGGTCG TTATGCGATG ACCAACCGCA GCGTTGAAGA CTCTTGGCAA
ATGACGGGCA GTGACATTGT TGGTAAGAAT GACTTCGAGT TGTTTAGCAG TCGTCGAGCG
AAGAAGTTCA TTGATACCGA CCAGTTGGTC ATTGCTACTG GCAGCCAAAA TACCGTCGAA
GAATGCACTC TCATTGATGA CAACAACAAC CCAACCTGGT TGGAAACCAT CAAATCGCCA
ATCCGCAGCC AAACTGGTGA GCTCGTCGGT ATTTTAGGCA TGACACGTAA CGTCACTCGT
CGAAAGATGG TGGAAACTCA GTTGTCATTG GCGTCGAAAA TCTTCGATAA CTCCCACGAA
GGGATGGTGA TCACCGACCG TAAAGCCAAT ATTCTCGATG TGAACAGCGC CTTCACCCAC
ATCACTGGCT ACACAGCCGA AGAAGTGATC GGTAAGAACC CCAACATCCT GCGCTCTGGG
CACCATGACA GCAAATTTTA TCAACAGTTG TGGCGTCAAT TAGAAAGTAA GGGGCAATGG
AAAGGCGAAT TCATCAACCG TAAAAAAGAT GGCAGCATTT ACCCGCAGCT CGCCACCATC
AGCGCGGTGA TGGACGATAA AAACCATCTG ATTAACTACA TCTGTGTGTT CGAGGACATC
TCGGTACGTA AAGCTCATGA AGAAAAACTG CAACGCATGG CCTTTTACGA TCCATTGACC
AACCTGCCTA ACCGTACCCA TTTGATCAGC TTGCTCGAAC AGCACATCGA GAGTGGTCAG
CAACATCAAC ACGCGTTTGC GACCCTGTTC CTCGATATCG ACCACTTCAA GCACATCAAC
GACAGTATGG GGCACTTCTG TGGCGACCAG CTCCTGACTA AGCTCGCTGA TCGTCTGCAA
GATGTGTTGC ACTTACGCGC TCATGTGGCA CGTATTGGTG GCGATGAGTT TGTGATTATA
TTGCCGAATA TCGAGTCGGA TTCGCAGCTG ATCGACACCA TTGAGGACAT ACTCTGCCTG
TTCAACCGTC CTTTTGAAGT CAGTAAGAAC GAGCCTTTAC GTATCTCCAC CAGCGTAGGC
GTGGCACGTT ATCCTCAAGA CGGACAAGAA AGCGAAACCT TGCTCAAGAA TGCCGATACC
GCCATGTACT TGGCGAAGAA AAACGGTCGT AACGGCTACG CATTCTACTC ACCAGATTTG
ACCGATAAAT CCGTATCTCA TGTGCGTATG CAGTCTGCTC TGCATGAAGC GATTGAGAAA
AACCAACTTC ATTTAGCATA CCAACCGCAA TACAACTTAA GTGCCAACGA ACTGGTTGGC
GTAGAAGCCT TACTGCGTTG GCAGCATCCC GATCTTGGGA TGATTTCTCC AGCAGACTTT
ATCCCGATTG CAGAGAAAAC CGGCTTGATT CAAAGCATTG GTAAATGGGT CTTGGAACAA
GCTTGTTTGC AAGGTCGCGC ATGGCTGGAT AACGGCATTG AATTTGGCAA GCTCGCGGTG
AACGTATCGG CTCTTCAGCT ACAACAATCA GACTTCATCA GCAAACTTGG CGCGATTCTC
AAAGAGACTG AATTCCCGGC GCACCGTCTA GAGCTGGAAA TCACCGAAAG TTTCTTGCTG
ATTGACCCAC AACAAGCCAT CGCATCACTG AATTTACTGC GCGAACTCGG CATTGAGATC
TCTCTTGATG ACTTTGGTAC CGGTTACTCG TCACTGTCTT ACCTCAAAGG TTTGCCAATC
AACAAATTGA AGATCGACCG CTCTTTCGTA AGCGATGTTC CAAGCAATAC CGACAGCAAT
GCGATCGTGA ATGCCATCAT TGCGATGGGA CAAACCCTTT CGTTAAAAGT GGTTGCAGAA
GGCATCGAAA CCGACGAGCA AGCCCAATAC CTATTCGAGC GCGGCTGTAT CTACGGACAG
GGCTTCCGCT TTAGTGCCCC AGTTCGCGCC GAGAAGTTGT TTAAATAA
 
Protein sequence
MFRFAISPAL MTDWKQALQQ CCDATQAHGQ LYTFSYTRQW RLSEVATSPQ HHREVVAILD 
PATECFTYPQ LVVEQTPFQS QTLSYCPVWL PSGELFAALA LVHPTEQNTV ISGWLSALAG
RIGFDVAQIY HKEQKRHDVQ LPELLPSLQE FIDCLEDHTW IKSTDGRYAM TNRSVEDSWQ
MTGSDIVGKN DFELFSSRRA KKFIDTDQLV IATGSQNTVE ECTLIDDNNN PTWLETIKSP
IRSQTGELVG ILGMTRNVTR RKMVETQLSL ASKIFDNSHE GMVITDRKAN ILDVNSAFTH
ITGYTAEEVI GKNPNILRSG HHDSKFYQQL WRQLESKGQW KGEFINRKKD GSIYPQLATI
SAVMDDKNHL INYICVFEDI SVRKAHEEKL QRMAFYDPLT NLPNRTHLIS LLEQHIESGQ
QHQHAFATLF LDIDHFKHIN DSMGHFCGDQ LLTKLADRLQ DVLHLRAHVA RIGGDEFVII
LPNIESDSQL IDTIEDILCL FNRPFEVSKN EPLRISTSVG VARYPQDGQE SETLLKNADT
AMYLAKKNGR NGYAFYSPDL TDKSVSHVRM QSALHEAIEK NQLHLAYQPQ YNLSANELVG
VEALLRWQHP DLGMISPADF IPIAEKTGLI QSIGKWVLEQ ACLQGRAWLD NGIEFGKLAV
NVSALQLQQS DFISKLGAIL KETEFPAHRL ELEITESFLL IDPQQAIASL NLLRELGIEI
SLDDFGTGYS SLSYLKGLPI NKLKIDRSFV SDVPSNTDSN AIVNAIIAMG QTLSLKVVAE
GIETDEQAQY LFERGCIYGQ GFRFSAPVRA EKLFK