| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00559 |
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| Symbol | |
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| ID | 5554239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009783 |
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| Strand | - |
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| Start bp | 540690 |
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| End bp | 543137 |
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| Gene Length | 2448 bp |
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| Protein Length | 815 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640906054 |
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| Product | signal transduction protein |
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| Protein accession | YP_001443789 |
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| Protein GI | 156972882 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCGCT TCGCTATCTC CCCTGCATTG ATGACTGACT GGAAACAGGC TCTGCAACAA
TGCTGTGATG CCACACAGGC GCACGGTCAG CTTTATACGT TCAGCTACAC TCGCCAATGG
CGTTTGAGTG AGGTAGCCAC ATCGCCGCAG CATCATCGTG AAGTTGTCGC GATTCTCGAT
CCTGCCACTG AGTGCTTTAC CTATCCTCAA CTCGTTGTTG AACAAACGCC CTTTCAAAGC
CAAACCTTGA GTTACTGCCC GGTATGGCTG CCGAGTGGTG AGCTATTTGC TGCGCTCGCA
TTGGTTCATC CAACTGAGCA AAATACTGTT ATTTCTGGGT GGTTAAGCGC ATTAGCGGGA
CGTATCGGCT TTGATGTTGC TCAGATTTAT CATAAAGAGC AGAAGCGCCA CGATGTTCAA
TTGCCAGAGT TACTGCCATC ACTGCAAGAG TTTATCGACT GCTTAGAAGA CCACACGTGG
ATAAAAAGTA CCGATGGTCG TTATGCGATG ACCAACCGCA GCGTTGAAGA CTCTTGGCAA
ATGACGGGCA GTGACATTGT TGGTAAGAAT GACTTCGAGT TGTTTAGCAG TCGTCGAGCG
AAGAAGTTCA TTGATACCGA CCAGTTGGTC ATTGCTACTG GCAGCCAAAA TACCGTCGAA
GAATGCACTC TCATTGATGA CAACAACAAC CCAACCTGGT TGGAAACCAT CAAATCGCCA
ATCCGCAGCC AAACTGGTGA GCTCGTCGGT ATTTTAGGCA TGACACGTAA CGTCACTCGT
CGAAAGATGG TGGAAACTCA GTTGTCATTG GCGTCGAAAA TCTTCGATAA CTCCCACGAA
GGGATGGTGA TCACCGACCG TAAAGCCAAT ATTCTCGATG TGAACAGCGC CTTCACCCAC
ATCACTGGCT ACACAGCCGA AGAAGTGATC GGTAAGAACC CCAACATCCT GCGCTCTGGG
CACCATGACA GCAAATTTTA TCAACAGTTG TGGCGTCAAT TAGAAAGTAA GGGGCAATGG
AAAGGCGAAT TCATCAACCG TAAAAAAGAT GGCAGCATTT ACCCGCAGCT CGCCACCATC
AGCGCGGTGA TGGACGATAA AAACCATCTG ATTAACTACA TCTGTGTGTT CGAGGACATC
TCGGTACGTA AAGCTCATGA AGAAAAACTG CAACGCATGG CCTTTTACGA TCCATTGACC
AACCTGCCTA ACCGTACCCA TTTGATCAGC TTGCTCGAAC AGCACATCGA GAGTGGTCAG
CAACATCAAC ACGCGTTTGC GACCCTGTTC CTCGATATCG ACCACTTCAA GCACATCAAC
GACAGTATGG GGCACTTCTG TGGCGACCAG CTCCTGACTA AGCTCGCTGA TCGTCTGCAA
GATGTGTTGC ACTTACGCGC TCATGTGGCA CGTATTGGTG GCGATGAGTT TGTGATTATA
TTGCCGAATA TCGAGTCGGA TTCGCAGCTG ATCGACACCA TTGAGGACAT ACTCTGCCTG
TTCAACCGTC CTTTTGAAGT CAGTAAGAAC GAGCCTTTAC GTATCTCCAC CAGCGTAGGC
GTGGCACGTT ATCCTCAAGA CGGACAAGAA AGCGAAACCT TGCTCAAGAA TGCCGATACC
GCCATGTACT TGGCGAAGAA AAACGGTCGT AACGGCTACG CATTCTACTC ACCAGATTTG
ACCGATAAAT CCGTATCTCA TGTGCGTATG CAGTCTGCTC TGCATGAAGC GATTGAGAAA
AACCAACTTC ATTTAGCATA CCAACCGCAA TACAACTTAA GTGCCAACGA ACTGGTTGGC
GTAGAAGCCT TACTGCGTTG GCAGCATCCC GATCTTGGGA TGATTTCTCC AGCAGACTTT
ATCCCGATTG CAGAGAAAAC CGGCTTGATT CAAAGCATTG GTAAATGGGT CTTGGAACAA
GCTTGTTTGC AAGGTCGCGC ATGGCTGGAT AACGGCATTG AATTTGGCAA GCTCGCGGTG
AACGTATCGG CTCTTCAGCT ACAACAATCA GACTTCATCA GCAAACTTGG CGCGATTCTC
AAAGAGACTG AATTCCCGGC GCACCGTCTA GAGCTGGAAA TCACCGAAAG TTTCTTGCTG
ATTGACCCAC AACAAGCCAT CGCATCACTG AATTTACTGC GCGAACTCGG CATTGAGATC
TCTCTTGATG ACTTTGGTAC CGGTTACTCG TCACTGTCTT ACCTCAAAGG TTTGCCAATC
AACAAATTGA AGATCGACCG CTCTTTCGTA AGCGATGTTC CAAGCAATAC CGACAGCAAT
GCGATCGTGA ATGCCATCAT TGCGATGGGA CAAACCCTTT CGTTAAAAGT GGTTGCAGAA
GGCATCGAAA CCGACGAGCA AGCCCAATAC CTATTCGAGC GCGGCTGTAT CTACGGACAG
GGCTTCCGCT TTAGTGCCCC AGTTCGCGCC GAGAAGTTGT TTAAATAA
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| Protein sequence | MFRFAISPAL MTDWKQALQQ CCDATQAHGQ LYTFSYTRQW RLSEVATSPQ HHREVVAILD
PATECFTYPQ LVVEQTPFQS QTLSYCPVWL PSGELFAALA LVHPTEQNTV ISGWLSALAG
RIGFDVAQIY HKEQKRHDVQ LPELLPSLQE FIDCLEDHTW IKSTDGRYAM TNRSVEDSWQ
MTGSDIVGKN DFELFSSRRA KKFIDTDQLV IATGSQNTVE ECTLIDDNNN PTWLETIKSP
IRSQTGELVG ILGMTRNVTR RKMVETQLSL ASKIFDNSHE GMVITDRKAN ILDVNSAFTH
ITGYTAEEVI GKNPNILRSG HHDSKFYQQL WRQLESKGQW KGEFINRKKD GSIYPQLATI
SAVMDDKNHL INYICVFEDI SVRKAHEEKL QRMAFYDPLT NLPNRTHLIS LLEQHIESGQ
QHQHAFATLF LDIDHFKHIN DSMGHFCGDQ LLTKLADRLQ DVLHLRAHVA RIGGDEFVII
LPNIESDSQL IDTIEDILCL FNRPFEVSKN EPLRISTSVG VARYPQDGQE SETLLKNADT
AMYLAKKNGR NGYAFYSPDL TDKSVSHVRM QSALHEAIEK NQLHLAYQPQ YNLSANELVG
VEALLRWQHP DLGMISPADF IPIAEKTGLI QSIGKWVLEQ ACLQGRAWLD NGIEFGKLAV
NVSALQLQQS DFISKLGAIL KETEFPAHRL ELEITESFLL IDPQQAIASL NLLRELGIEI
SLDDFGTGYS SLSYLKGLPI NKLKIDRSFV SDVPSNTDSN AIVNAIIAMG QTLSLKVVAE
GIETDEQAQY LFERGCIYGQ GFRFSAPVRA EKLFK
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