Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_00554 |
Symbol | |
ID | 5552790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009783 |
Strand | - |
Start bp | 536147 |
End bp | 536668 |
Gene Length | 522 bp |
Protein Length | 173 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640906049 |
Product | DNA-directed RNA polymerase subunit sigma |
Protein accession | YP_001443784 |
Protein GI | 156972877 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAACACCG ATAAACATAA GATAGGTTTA CTGCTTTCCC AAGTAGCGCT TCGAGACCAA GCTGCGTTCG AAGCGCTATA CCAGTTGACC AGTACCCGGC TTTTCAACGT TATCCTCGGC GTCGTTAAAG ACGAACACGT TGCAGCAGAT ATACTTCAAG AGGGGTTCGT AAAGCTCTGG CACAACAACC AGCAATATCC AGTAAATCAC CCTTGGGCTT GGTTATGCCA AAGTATGAGA AACCTCGCTA TAGATGAAAT TAGAAAGCGG AACAATCGAG GGGAAGAACA ACTGGTAAAG CCCCCCGAAG AGGTCGCTCT CGAAGTAACA TCTGACTCAG GAGCCAACTT ATCATACTGC CTAAACTCGC TCGCTGAAGA AAAAAGGAAT GCGATTATCT TGGCCTATCA GCACGGGATG AGTCATCAAG AGATCGTCCA CCATGTGAGT ACTCCACTTG GCACAGTGAA ATCGTGGATT CGCCGAGGTT TACAGGAGCT AAAACGATGC CTAACCGATT AA
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Protein sequence | MNTDKHKIGL LLSQVALRDQ AAFEALYQLT STRLFNVILG VVKDEHVAAD ILQEGFVKLW HNNQQYPVNH PWAWLCQSMR NLAIDEIRKR NNRGEEQLVK PPEEVALEVT SDSGANLSYC LNSLAEEKRN AIILAYQHGM SHQEIVHHVS TPLGTVKSWI RRGLQELKRC LTD
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