Gene VIBHAR_00554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_00554 
Symbol 
ID5552790 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand
Start bp536147 
End bp536668 
Gene Length522 bp 
Protein Length173 aa 
Translation table11 
GC content47% 
IMG OID640906049 
ProductDNA-directed RNA polymerase subunit sigma 
Protein accessionYP_001443784 
Protein GI156972877 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAACACCG ATAAACATAA GATAGGTTTA CTGCTTTCCC AAGTAGCGCT TCGAGACCAA 
GCTGCGTTCG AAGCGCTATA CCAGTTGACC AGTACCCGGC TTTTCAACGT TATCCTCGGC
GTCGTTAAAG ACGAACACGT TGCAGCAGAT ATACTTCAAG AGGGGTTCGT AAAGCTCTGG
CACAACAACC AGCAATATCC AGTAAATCAC CCTTGGGCTT GGTTATGCCA AAGTATGAGA
AACCTCGCTA TAGATGAAAT TAGAAAGCGG AACAATCGAG GGGAAGAACA ACTGGTAAAG
CCCCCCGAAG AGGTCGCTCT CGAAGTAACA TCTGACTCAG GAGCCAACTT ATCATACTGC
CTAAACTCGC TCGCTGAAGA AAAAAGGAAT GCGATTATCT TGGCCTATCA GCACGGGATG
AGTCATCAAG AGATCGTCCA CCATGTGAGT ACTCCACTTG GCACAGTGAA ATCGTGGATT
CGCCGAGGTT TACAGGAGCT AAAACGATGC CTAACCGATT AA
 
Protein sequence
MNTDKHKIGL LLSQVALRDQ AAFEALYQLT STRLFNVILG VVKDEHVAAD ILQEGFVKLW 
HNNQQYPVNH PWAWLCQSMR NLAIDEIRKR NNRGEEQLVK PPEEVALEVT SDSGANLSYC
LNSLAEEKRN AIILAYQHGM SHQEIVHHVS TPLGTVKSWI RRGLQELKRC LTD