| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00351 |
|---|
| Symbol | uvrD |
|---|
| ID | 5556477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | - |
|---|
| Start bp | 338567 |
|---|
| End bp | 340741 |
|---|
| Gene Length | 2175 bp |
|---|
| Protein Length | 724 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640905845 |
|---|
| Product | DNA-dependent helicase II |
|---|
| Protein accession | YP_001443599 |
|---|
| Protein GI | 156972692 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01075] DNA helicase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGATC CATCTCTATT ACTCGACGGT TTGAACGACA AACAACGTGA AGCCGTTGCA
GCACCTCTAG AAAACTTGCT CGTCCTTGCT GGTGCAGGGA GTGGTAAGAC ACGCGTTCTT
GTTCACCGTA TCGCTTGGTT GATGTCGGTA GAGCAGGCTT CTCCGTTCTC AATCATGTCG
GTAACCTTTA CCAATAAGGC GGCGGCAGAG ATGCGTGGAC GTATCGAAGA GCTAATGATG
GGCAGTGCAG GCGGTATGTG GAATGGTACT TTCCACGGCA TTTGTCACCG TATTCTGCGT
GCGCACTATC TTGATGCCAA GCTACCGGAA GATTTCCAAA TCATCGACAG TGACGACCAA
CAGCGTCTAC TGAAGCGTTT GATCAAAGCG CAAAACCTTG ATGAGAAGCA GTGGCCAGCA
CGCCAAGTGG CATGGTGGAT CAACGGTAAG AAAGACGAAG GTCTACGTCC GTCGCACATT
GATGCGTACC ACGATCCAGT GACCAAGACA TATCTGCAGC TGTACACCGC TTACCAAGAA
GCGTGTGATC GTGCTGGTTT AGTCGATTTT GCGGAAATCT TGCTGCGCGC ACATGAGCTA
CTGCGTGATA ACAAGTTCGT TCGTGAGCAC TACCAAGCGC GCTTTAAGCA CATCTTGGTG
GACGAGTTCC AAGATACCAA CAACATCCAA TACGCTTGGC TACGTATGAT GGCGGGCCCT
GAGTGTCACG TGATGATCGT AGGTGATGAC GATCAGTCGA TTTACGGTTG GCGTGGTGCA
AAAGTCGAGA ACATTGAGAA ATTTACGCTG GAATTCCCAA GCGTGAATAC CATTCGTCTT
GAGCAAAACT ACCGTTCAAC TAAGACCATT CTGGAAGCGT CCAACGCTCT GATCGCGAAT
AACACCGAGC GTATGGGTAA AGAGCTTTGG ACTGATGGCG TTGTCGGTGA GCCTATCTCG
GTATACAGCG CTTACAACGA ATTGGATGAA GCCCGTTTTG CGGTAAACAA AATCAAAGAG
TGGCAAGACA AGGGAGGGGC TCTGAATGAC GCTGCAATGC TTTACCGTAA CAACGCTCAG
TCGCGTGTTC TTGAAGAAGC ATTAATCCAA GCTGGTCTGC CTTACCGTAT CTACGGCGGC
ATGCGATTCT TCGAACGTCA GGAAATCAAA GATGCTTTGA GCTACATGCG TTTGATTGCC
AACCGTAATG ATGATGCGGC ATTTGAACGT GTGGTGAATA CGCCAACGCG TGGCTTGGGT
GATAAGACGC TTGAAACCAT CCGTTTTGCG GCTCGTGACC GTGGTTGCAC CATGTGGGAA
GCGAGTGTGG CGATGTTGGA TGAGAAGGTG CTTGCTGGTC GTGCTGCTGG TGCTTTAAGT
CGTTTTATCG AGCTTGTTAC GGCACTAGAA GACGACACCA TCGAGATGCC GCTGCATCAC
CAAACTGACC ATGTGATTAA ATATTCGGGC TTGTTCGCGA TGTACGAACA AGAGAAGGGC
GAAAAGTCTA AGGCGCGTAT TGAGAACTTG GAGGAATTGG TGACCGCAAC TCGCCAATTC
GAGAAACCAG AAGAAGCTGA GGACATGTCA CTGCTGACGG CATTCCTAAC CCACGCGGCA
CTAGAAGCGG GCGAAGGACA AGCGGACGAG TTTGAAGATG CGGTTCAGCT TATGACATTG
CACAGTGCGA AAGGTCTAGA GTTCCCATTG GTGTTTATGG TTGGTGTGGA AGAAGGCATG
TTCCCAAGCC AAATGTCGGC AGAAGAAGCA GGGCGTTTAG AAGAAGAACG CCGTCTGTGT
TACGTAGGCA TGACCCGTGC GATGCAGAAA CTGTACATCA CTTATGCTGA AATGCGCCGT
TTGTACGGTC AGGATAAGTA CCATAAACCG TCTCGCTTTA TCCGTGAACT GCCAGAAACT
TGTTTAGACG AAGTACGCAT GAAGGCGCAA GTTAGCCGTC CTGCAAGCAG CGGTCGATTT
AGCCAAACGG CGGTGAAAGA GAGCTTTAAT GAAACTGGCT TTACGCTAGG TTCTCGTGTG
ATGCATCCAA AGTTTGGTGA AGGCACTATC ATCAACTTCG AAGGCAGTGG TCCACAGAGC
CGCGTACAGA TTGCCTTTAA TGGCGAGGGC ATCAAATGGT TGGTGACTGC TTACGCACGA
CTAGAGAAAC TGTAA
|
|---|
| Protein sequence | MIDPSLLLDG LNDKQREAVA APLENLLVLA GAGSGKTRVL VHRIAWLMSV EQASPFSIMS
VTFTNKAAAE MRGRIEELMM GSAGGMWNGT FHGICHRILR AHYLDAKLPE DFQIIDSDDQ
QRLLKRLIKA QNLDEKQWPA RQVAWWINGK KDEGLRPSHI DAYHDPVTKT YLQLYTAYQE
ACDRAGLVDF AEILLRAHEL LRDNKFVREH YQARFKHILV DEFQDTNNIQ YAWLRMMAGP
ECHVMIVGDD DQSIYGWRGA KVENIEKFTL EFPSVNTIRL EQNYRSTKTI LEASNALIAN
NTERMGKELW TDGVVGEPIS VYSAYNELDE ARFAVNKIKE WQDKGGALND AAMLYRNNAQ
SRVLEEALIQ AGLPYRIYGG MRFFERQEIK DALSYMRLIA NRNDDAAFER VVNTPTRGLG
DKTLETIRFA ARDRGCTMWE ASVAMLDEKV LAGRAAGALS RFIELVTALE DDTIEMPLHH
QTDHVIKYSG LFAMYEQEKG EKSKARIENL EELVTATRQF EKPEEAEDMS LLTAFLTHAA
LEAGEGQADE FEDAVQLMTL HSAKGLEFPL VFMVGVEEGM FPSQMSAEEA GRLEEERRLC
YVGMTRAMQK LYITYAEMRR LYGQDKYHKP SRFIRELPET CLDEVRMKAQ VSRPASSGRF
SQTAVKESFN ETGFTLGSRV MHPKFGEGTI INFEGSGPQS RVQIAFNGEG IKWLVTAYAR
LEKL
|
|---|
| |