Gene VIBHAR_00344 details

Gene Information

• Locus tag: VIBHAR_00344
• ID: 5555905
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009783
• Strand: -
• Start bp: 329433
• End bp: 331310
• Gene Length: 1878 bp
• Protein Length: 625 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640905838
• Product: ATP-dependent DNA helicase RecQ
• Protein accession: YP_001443593
• Protein GI: 156972686
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0514] Superfamily II DNA helicase
• TIGRFAM ID: [TIGR00614] ATP-dependent DNA helicase, RecQ family; [TIGR01389] ATP-dependent DNA helicase RecQ

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATAAGC ACCTCTTTTT AAGACCCAAT CTGAGATTTT TCATGACCTC GACTTTGCTA 
GCCGAACAAT CTGATTCGCC TTTGACGCCT CAACGTGTGT TGGAGGATGT GTTTGGTTAC 
CAAGAGTTCC GAGATGGTCA GCAACTGGTG ATTGATGCTG CAGTAGAAGG TCGTGACAGC 
TTAGTTATCC TACCTACTGG TGGCGGTAAA TCGCTGTGTT ATCAAATCCC TGCTTTGGTT 
CGCTCTGGTA TTACTTTGGT GATTTCTCCG CTGATTTCGC TGATGAAAGA CCAAGTCGAT 
CAGCTTAAAG CCAACGGCGT GGCGGCTGAG TGCATCAACT CGACCATGCC TCGTGAAGAA 
TTGCTCAGTG TGTATAACCG TATGTATACC GGGCATATTA AGTTGGTGTA CGTCTCGCCA 
GAACGCGTAT TGATGCGTGA CTTTATTGAG CGCTTGGAAA ACCTGCCGCT ATCCATGATT 
GCCGTTGATG AAGCGCACTG TATTTCCCAA TGGGGACACG ACTTCCGTCC AGAATACGCC 
GCGCTTGGTC AACTTAAGCA GCAGTTTTCC CATGTGCCAT TTATGGCGCT GACAGCGACG 
GCGGATGACG CAACGCGCCG AGATATTCTT GATCGTCTGC AACTGAATAA TCCAGAGGTT 
TACCTAGGCA GCTTCGACCG CCCTAACATT CGCTATAACT TAGTTGAGAA GCACAAGCCG 
GTTTCGCAAA TCGTTCGCTA TCTTGAAACC CAAAAGGGTA ATTGCGGCAT CATCTATTGT 
GGTAGCCGTA AAAAAGTTGA GATGGTGACC GAGAAGCTGT GCAACAACCA CATTCGTGCC 
GCTGGTTATC ACGCAGGTAT GGATGCTGAT GAGCGCGCTT ACGTTCAAGA AGCTTTCCAA 
CGTGATGACA TCCAAATCGT AGTGGCGACT GTGGCATTCG GTATGGGCAT CAACAAACCA 
AACGTGCGCT TTGTGGTTCA CTTTGATATC CCACGTAACA TCGAGTCTTA CTATCAGGAA 
ACCGGTCGTG CAGGGCGTGA TGGCTTGCCT GCGGAAGCGA TGATGTTGTA TGACCCAGCG 
GACATTAGTT GGCTGCGTCG TATGTTGGAT GAGAAAGACG ATGGTCCGCA GAAGCAGGTG 
GAAACCCACA AACTGAATGC GATGAGTGCC TTTGCTGAGG CGCAGACTTG TCGTCGTCAG 
GTGCTATTGA ATTACTTTGG TGAGTATCGC GAGAAGCCAT GTGGCAACTG CGATATTTGC 
TTAGACCCGC CGAAACACTT TGATGCAACA GAAGAAGCGC GTAAGGCGCT ATCTTGTGTG 
TACCGAGTGA ATCAGAGCTT TGGTATGGGC TACGTAGTGG AAGTGCTACG TGGTATGCAA 
AACATTCGGG TACGTGAAAA TGGCCACGAT AAGATTTCTA CCTACTCGAT AGGGCGCGAT 
CACAGCCACG ATTATTGGGT GAGTATCTTC CGTCAATTAA TCCATAAAGG GCTGCTGTTC 
CAAAACATCA CGCGTAACTC AACGCTGCAA CTCACCGAAG AGGCGCGTCC GCTGCTCCGT 
GGCGATGTGA CTCTGGCGTT AGCGGTTCCA CGTTTAGACA CCGCAGCACG TGCGGCGAAA 
TCAGATAAAC TGACCAGCAA GAACTACGAC AAAAAGCTGT TTGCTAAGTT ACGTAAGCTG 
CGTAAGTCGA TTGCTGATGA AGATGGTTTG CCACCATACG TGGTCTTCAG TGACGCTACC 
TTGATTGATA TGGCGGAAAT TCTGCCAACG TCTTACGGCG AAATGCTGGC AGTCAGCGGT 
GTTGGTCAGC GCAAGCTGGA GAAGTATGCC GATCCATTCC TTGATTTGAT TCAAGAACAC 
ATTACTCACC ACGGATAA 

 

Protein sequence

MHKHLFLRPN LRFFMTSTLL AEQSDSPLTP QRVLEDVFGY QEFRDGQQLV IDAAVEGRDS 
LVILPTGGGK SLCYQIPALV RSGITLVISP LISLMKDQVD QLKANGVAAE CINSTMPREE 
LLSVYNRMYT GHIKLVYVSP ERVLMRDFIE RLENLPLSMI AVDEAHCISQ WGHDFRPEYA 
ALGQLKQQFS HVPFMALTAT ADDATRRDIL DRLQLNNPEV YLGSFDRPNI RYNLVEKHKP 
VSQIVRYLET QKGNCGIIYC GSRKKVEMVT EKLCNNHIRA AGYHAGMDAD ERAYVQEAFQ 
RDDIQIVVAT VAFGMGINKP NVRFVVHFDI PRNIESYYQE TGRAGRDGLP AEAMMLYDPA 
DISWLRRMLD EKDDGPQKQV ETHKLNAMSA FAEAQTCRRQ VLLNYFGEYR EKPCGNCDIC 
LDPPKHFDAT EEARKALSCV YRVNQSFGMG YVVEVLRGMQ NIRVRENGHD KISTYSIGRD 
HSHDYWVSIF RQLIHKGLLF QNITRNSTLQ LTEEARPLLR GDVTLALAVP RLDTAARAAK 
SDKLTSKNYD KKLFAKLRKL RKSIADEDGL PPYVVFSDAT LIDMAEILPT SYGEMLAVSG 
VGQRKLEKYA DPFLDLIQEH ITHHG