| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00309 |
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| Symbol | dapF |
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| ID | 5555309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009783 |
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| Strand | - |
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| Start bp | 297320 |
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| End bp | 298150 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640905804 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001443564 |
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| Protein GI | 156972657 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCATTTCC ACTTTTCCAA AATGCACGGT TTGGGCAACG ACTTTATGGT CGTCGACTGC
ATTACCCAGA ACGTGTTTTT CTCGCAAGAT TTGATCCGTC GTTTGGCGGA TCGTCACACG
GGCGTCGGTT TTGACCAATT GCTCGTGGTT GAAGCGCCTT ATGATCCAGA AACCGATTTC
CACTACCGCA TTTTTAATGC CGATGGTAGT GAAGTTGAGC AGTGTGGTAA TGGCGCTCGC
TGTTTCGCGC GTTTCGTCCG TTTGAAAGGT TTGACGAATA GGTACAGCAT CAGCGTTAGC
ACCAAGAAAG GTAAGATGAT TCTTGATGTT GAAGATGATG GTGAAGTCAC GGTGAACATG
GGCGTACCTG AATTCGAGCC GAACAAGATC CCTTTCAAAG CGAAGCAGAA AGAGAAAACC
TACATCATGC GTGCAGGCGA TAAGACCCTG TTCTGTGGCG CAGTGAGCAT GGGTAACCCG
CACGTGGTGA CTGTGGTCGA CGATGTGGAT ACGGCAGAAG TGGAAACACT CGGACCGCTA
TTAGAATCAC ACGAACGCTT CCCTGAGCGT GTGAACGCGG GCTTTATGCA AGTTGTGAAT
CGCAATCACA TCCGCCTACG CGTGTATGAG CGTGGTGCGG GTGAAACACA AGCTTGCGGC
AGCGGTGCCT GTGGCGCAGT TGCGGTGGGC ATCCTGCAAG GTCTATTGGA TGAAAACGTG
AAAGTTTCAC TTCCTGGTGG TGACCTACGC ATATCTTGGC AAGGTCCAGG CAAACCATTG
TTTATGACCG GTCCAGCAAC TCACGTATTT GATGGTCAAT TGTCGTGCTA G
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| Protein sequence | MHFHFSKMHG LGNDFMVVDC ITQNVFFSQD LIRRLADRHT GVGFDQLLVV EAPYDPETDF
HYRIFNADGS EVEQCGNGAR CFARFVRLKG LTNRYSISVS TKKGKMILDV EDDGEVTVNM
GVPEFEPNKI PFKAKQKEKT YIMRAGDKTL FCGAVSMGNP HVVTVVDDVD TAEVETLGPL
LESHERFPER VNAGFMQVVN RNHIRLRVYE RGAGETQACG SGACGAVAVG ILQGLLDENV
KVSLPGGDLR ISWQGPGKPL FMTGPATHVF DGQLSC
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