| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00224 |
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| Symbol | |
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| ID | 5556433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009783 |
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| Strand | - |
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| Start bp | 222008 |
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| End bp | 226210 |
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| Gene Length | 4203 bp |
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| Protein Length | 1400 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640905720 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001443491 |
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| Protein GI | 156972584 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAACTT TCTAAAAGCA CAGCATAAGA CCGAAGAATT TGATGCAATC
AAAATCGGTC TATCTTCACC AGACATGATC CGTTCATGGT CTTTCGGTGA AGTTAAAAAA
CCTGAAACGA TCAACTATCG TACGTTCAAA CCTGAACGCG ATGGTCTGTT CTGTGCGCGT
ATCTTTGGTC CAGTTAAAGA CTACGAATGT CTTTGTGGTA AGTACAAGCG CCTGAAGCAC
CGTGGTGTTA TCTGTGAGAA GTGTGGTGTA GAAGTTACAC AAACTAAAGT TCGTCGTGAC
CGCATGGGCC ACATCGAGCT AGCTTCACCG GTAGCTCACA TCTGGTTCCT AAAATCGCTA
CCGTCTCGTA TCGGTCTACT AATGGATATC CCTCTACGTG ATATCGAACG TGTTCTTTAC
TTCGAAATGT ACGTAGTAAC AGAACCAGGT ATGACTGATC TAGAAAAATC TCAGATGCTT
ACTGAAGAAG AGTATCTAGA TCGTCTAGAA GAGTGGGGCG ACGAGTTCAC TGCTAAGATG
GGTGCAGAAG CAATCAAGGA CCTACTAGGT TCTATGGATA TGCACGCTGA AGCAGAACAA
ATGCGTGAAG AGCTAGAAAC AACTAACTCT GAAACTAAGC GTAAGAAAGT AACTAAGCGT
CTGAAACTGG TAGAAGCGTT TATTCAATCT GGCAACAACC CAGAGTGGAT GATCCTAACT
GTACTTCCAG TTCTTCCGCC AGATCTACGT CCTCTAGTAC CACTAGATGG CGGTCGTTTT
GCGACTTCAG ATCTGAACGA CCTATACCGT CGTGTGATCA ACCGTAACAA CCGTTTGAAG
CGTCTTCTAG AGCTAGCTGC TCCGGACATC ATCGTACGTA ACGAAAAACG TATGCTGCAA
GAGTCTGTTG ATGCGCTACT AGATAACGGT CGTCGTGGTC GTGCGATCAC AGGTTCTAAC
AAGCGTCCTC TGAAATCTCT TGCTGATATG ATCAAGGGTA AACAAGGTCG TTTCCGTCAG
AACCTTCTAG GTAAACGTGT AGACTACTCT GGCCGTTCTG TAATCACAGT AGGTCCATAC
CTTCGTCTAC ACCAGTGTGG TCTTCCTAAG AAGATGGCAC TTGAGCTATT CAAACCATTT
ATCTACAGCA AGCTAGAGAC TCGTGGTCTT GCGACTACAA TCAAAGCTGC TAAGAAGATG
GTAGAGCGTG AAGAAGCGGT AGTTTGGGAT ATCCTAGACG AAGTAATCCG TGAACACCCA
GTACTATTGA ACCGTGCACC TACACTTCAC CGTCTAGGTA TCCAGGCGTT CGAACCAGTA
CTAATCGAAG GCAAAGCGAT CCAGCTACAC CCACTAGTGT GTGCGGCGTA CAACGCGGAC
TTCGATGGTG ACCAAATGGC GGTTCACGTA CCTCTAACTC TAGAGGCACA GCTTGAAGCT
CGTACTCTGA TGATGTCGAC AAACAACATT CTGTCGCCAG CGTCAGGTGA TCCGATCATC
GTACCTTCTC AGGACGTTGT ATTGGGTCTG TACTACATGA CTCGTGACAA GATCAACGTG
AAAGGTGAAG GCATGTATCT TTCTGGCCCA GCAGAGGCTG AGAAAGCATA CCGCACTAAG
CAAGCTGAAC TTCACGCACG CGTTAAAGTA CGTATTACAG AAACAGTTGT AGACGAAGAC
GGCAACAGCA CAACAGAGAC TAAGATGGTT GATACAACTA TCGGTCGTGC AATGCTATGG
CAAATCGTGC CAGCTGGTCT ACCGTACAGC ATCGTTAACC AAAAACTAGG TAAGAAGCAA
ATCTCTAACC TACTAAACGA GGCGTACCGT AAGCTAGGTC TGAAAGACAC TGTAATCTTC
GCTGACCAAA TCATGTACAC AGGTTTCGCA TACGCGGCAC TATCTGGTGT ATCTGTTGGT
ATCGACGATA TGGTTGTACC GCCAGCTAAG TACACTGAAA TCGCAGAAGC GGAAGAAGAA
GTACGTGAAA TCCAGGAACA ATACCAATCT GGTCTTGTTA CTGCGGGCGA ACGATACAAC
AAAGTTATCG ATATCTGGGC ATCGACCAAC GATCGCGTAG CGAAAGCGAT GATGGCAAAC
CTTTCATCTG AAACGGTAGT TAACCGTGAC GGTGAAGAAG AGCAACAAGA ATCGTTTAAC
AGCATCTACA TGATGGCTGA CTCGGGTGCT CGTGGTTCTG CAGCTCAGAT TCGTCAGCTA
GCGGGTATGC GTGGTCTGAT GGCTCGTCCG GATGGTTCGA TCATCGAAAC GCCGATCACT
GCGAACTTTA AAGAAGGTCT AAACGTACTT CAGTACTTTA TCTCAACGCA CGGTGCTCGT
AAGGGTCTTG CGGATACGGC ACTGAAAACA GCGAACTCGG GTTACCTAAC TCGTCGTCTA
GTAGACGTTG CTCAAGACGT TGTTGTAACT GAACATGACT GTGGCACTCA TGAGGGTGTT
GACATGATGC CTCACATCGA GGGTGGTGAT GTTAAAGTTG CACTAACTGA GCTAGCGCTA
GGTCGTGTAG TAGCTGAAGA CGTTCTTAAG CCAGGTACAG AAGATGTTCT GATCCCACGT
AACACTCTAA TTGATGAGAA GTGGTGTCAG ATCATGGAAG AGAACTCAGT AGACAGCATG
AAAGTGCGCT CTGTAGTTAC TTGTGATTCT GACTTCGGTT GTTGTGCACA GTGTTACGGT
CGTGACCTAG CACGTGGTCA CCTAGTGAAC CAAGGTGAAG CAGTAGGTGT TATCGCTGCT
CAGTCTATCG GTGAACCGGG TACACAGCTT ACGATGCGTA CGTTCCACAT CGGTGGTGCA
GCATCTACTG CAGCAGCAGA GAACAGCATC CAAGCGAAGA CAACTGGTAC AGTTAAACTG
CACAACGCTA AGTTCGTAGT CAACAAAGAT AAGAAGCTAG TAATCACGTC TCGTGCATCT
GAGCTAACTA TCATTGATGA ATTCGGTCGT ACTAAAGAGA AGCACAAACT TCCTTACGGT
TCGATGCTAA GCAAAGGCGA CAACGACGCA GTAACAGCTG GTGAAGTTGT TGCTAACTGG
GAAGCGCACA CCATGCCAAT CATCACTGAA GTGGCAGGTC GCATCCAGTT CGTAGACATG
ATCGACGGTG TTACAGTTTC TCGTCAAACA GATGACCTAA CAGGTCTATC TTCAAGCGAA
GTGACTGACC CAGCAGCTCG CCCAGCAGCA GGTAAAGATA TGCGTCCAGC TATCAAACTT
GTTGATGAGC AAGGTAACGA TGTAATGATC CCTGGTACAG AAATGCCAGC TCACTACTTC
CTACCTGGTA AAGCGATTGT AAACATCGAA GATGGCGCTG AAGTTGGCAT TGGTGACACA
CTATCTCGTA TCCCTCAGAA ATCTGGCGGT AACAAAGATA TCACCGGTGG TCTACCACGC
GTAGCTGACC TATTCGAAGC TCGTAAGCCT AAAGAGCCTG CGATCCTTGC TGAGCACACA
GGTACTGTGA GCTTCGGTAA AGAAACGAAA GGTAAGCGTC GTCTAGTTAT CACTCGCGAC
AGTGGTGTTA CTTACGAAGA GATGATTCCT AAGCATCGTC AGTTGAACGT ATTTGAAGGT
GAGCGTGTTG AACGTGGTGA CGTGATCGCA GATGGTCCAG AGTCTCCACA TGACATCCTA
CGTCTACGTG GCGTACACGC TGTAACTCAG TACATCGCTA ACGAAGTACA AGAAGTTTAC
CGTCTACAAG GCGTTAAGAT TAACGATAAG CACATCGAGA CTATCGTTCG TCAAATGCTA
CGTAAGTGTA CAATTACTCA CGCTGGTGAC TCTGAGTTCC TACCTGGTGA GCAAGTTGAA
TACTCACAAG TTAAGATTGC TAACCGTAAC CTAGAAGCTG AAGGCAAAGA GCCTGCACGT
TTCGAGCGTG AGCTACTAGG TATTACTAAG GCATCTCTAG CGACTGAGTC GTTCATCTCT
GCGGCATCGT TCCAGGAGAC AACTCGCGTA CTAACAGAAG CTGCGGTTTC TGGTAAGCGT
GATGACCTAC GTGGTCTGAA AGAGAACGTA ATTGTTGGTC GTCTGATCCC AGCTGGTACT
GGTTTCGCAT ACCACCAAGA TCGTCAAGCT AAACGTGCTG AAGCGCAAGA AGGTCCATCT
GCTGAACAAG CAACAGATAA CCTAGCTGCA CTTCTAAACG CAGGCTTCTC TTCTGACGAG
TAA
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| Protein sequence | MKDLLNFLKA QHKTEEFDAI KIGLSSPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRD RMGHIELASP VAHIWFLKSL
PSRIGLLMDI PLRDIERVLY FEMYVVTEPG MTDLEKSQML TEEEYLDRLE EWGDEFTAKM
GAEAIKDLLG SMDMHAEAEQ MREELETTNS ETKRKKVTKR LKLVEAFIQS GNNPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLELAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY
LRLHQCGLPK KMALELFKPF IYSKLETRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RTLMMSTNNI LSPASGDPII VPSQDVVLGL YYMTRDKINV KGEGMYLSGP AEAEKAYRTK
QAELHARVKV RITETVVDED GNSTTETKMV DTTIGRAMLW QIVPAGLPYS IVNQKLGKKQ
ISNLLNEAYR KLGLKDTVIF ADQIMYTGFA YAALSGVSVG IDDMVVPPAK YTEIAEAEEE
VREIQEQYQS GLVTAGERYN KVIDIWASTN DRVAKAMMAN LSSETVVNRD GEEEQQESFN
SIYMMADSGA RGSAAQIRQL AGMRGLMARP DGSIIETPIT ANFKEGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDVVVT EHDCGTHEGV DMMPHIEGGD VKVALTELAL
GRVVAEDVLK PGTEDVLIPR NTLIDEKWCQ IMEENSVDSM KVRSVVTCDS DFGCCAQCYG
RDLARGHLVN QGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASTAAAENSI QAKTTGTVKL
HNAKFVVNKD KKLVITSRAS ELTIIDEFGR TKEKHKLPYG SMLSKGDNDA VTAGEVVANW
EAHTMPIITE VAGRIQFVDM IDGVTVSRQT DDLTGLSSSE VTDPAARPAA GKDMRPAIKL
VDEQGNDVMI PGTEMPAHYF LPGKAIVNIE DGAEVGIGDT LSRIPQKSGG NKDITGGLPR
VADLFEARKP KEPAILAEHT GTVSFGKETK GKRRLVITRD SGVTYEEMIP KHRQLNVFEG
ERVERGDVIA DGPESPHDIL RLRGVHAVTQ YIANEVQEVY RLQGVKINDK HIETIVRQML
RKCTITHAGD SEFLPGEQVE YSQVKIANRN LEAEGKEPAR FERELLGITK ASLATESFIS
AASFQETTRV LTEAAVSGKR DDLRGLKENV IVGRLIPAGT GFAYHQDRQA KRAEAQEGPS
AEQATDNLAA LLNAGFSSDE
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