| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00085 |
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| Symbol | |
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| ID | 5555620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009783 |
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| Strand | - |
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| Start bp | 87518 |
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| End bp | 90010 |
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| Gene Length | 2493 bp |
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| Protein Length | 830 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640905581 |
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| Product | ribonuclease R |
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| Protein accession | YP_001443372 |
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| Protein GI | 156972465 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGACA ACATTCCAAA CGATCCTTTC GCAGATCGTG AATCCAAAAA TTACGAAAAT
CCAATCCCAA GCCGAGAGTT CATTCTTGAG TTTCTAGAAG AAGCAGGCGT ACCGATGAAT
CGCAATGATT TGTTCGAAGC GCTGAAACTT AAAGGTGAAG AGCAGTACGA AGGTTTGCGT
CGTCGACTGC GCGCAATGGA GCGTGATGGT CAGCTTGTGT TTACGCGCCG TCAGTGCTAT
GCGTTACCAG AAAAACTCGA GATGGTGAAA GGTTACGTAA TTGGCCACAA AGATGGCCAT
GGTTGGGTTC GTCCTGAAGG CAGTGTCGGC AAGGATAATG ACATTGTACT GCCGCATCAC
CAGATGAAGC ACATCATCCA CGGTGACTAC GTGCTGGTGC AACCAACTGA CAACAGCAAG
CGTGGTCGTC GTGAAGGTCG TCTTGTACGT GTTTTAGAAG AACGTAATAC GCAGATTGTG
GGTCGTTTCT TCCTTGAATA CGGCTACTCA TACGTTGTGC CTGATGACTC TCGTATTAGC
CAAGATATTT TGATCCCAAA TGAGCACAAA GCGGGTGCTC GTATGGGTAA CGTGGTCGTG
ATTGAGATTA CTGATCGCGG CTCTCGCTCA CGTGGCATGA TGGGTAAAGT GGTTGAAGTC
CTTGGCGAAA ACATGGCGCC GGGCATGGAA ACGCAAATTG CAATTCGTAC CCACCAAATT
CCACACGATT GGCCAGAAGC GGTTGATAAG CAAATTGAAA ACCTGGGCGA AGAAGTTCCA
GAAGAAGCGA AAGTAGGTCG TGTCGACCTG CGTGACTTAC CGTTGGTGAC CATCGATGGT
GAAGACGCGC GTGACTTCGA TGACGCCGTT TACTGTGAGA AGAAAAAGAG TGGCGGTTGG
CGCTTATGGG TTGCGATTGC TGACGTAAGT TACTACGTAC GTACAGACTC TGCGCTGGAT
AAAGAAGCCA TCAACCGTGG TAACTCGGTG TACTTCCCAT CTCAAGTGGT GCCAATGCTA
CCTGAAGTGC TATCAAACGG TTTGTGTTCA CTTAACCCAC AGGTTGATCG CTTGTGTATG
GTGTGTGAGA TGACCATCTC TGACACTGGT AAGCTGTCAG GCTACAAACA CTACGAAGCC
GTGATGAATT CGCACGCTCG TCTGACTTAC AACAAAGTGG GCGCGATTCT AGAAGGGGAT
GAAGAACTAC GTATGCGTTA TCACGCTGTC GTTCCTCACC TTGAAGAGCT GCACGCGATG
TACAAAATAC TTAAAGAAGC GCGTGATAAC CGTGGTGCGA TCGAATTCGA AACCGTTGAA
GCTAAGTTTA TCTTCAACTC GGATCGTAAG ATTGAAAGCA TCGAGCCAGT GATTCGTAAC
GACGCACATA AGATCATCGA AGAATGTATG ATCCTCGCGA ACATCGCTTC AGCGTCTTAT
GTTGAGAAAG CGAAAGAACC AGCGTTGTAC CGTGTTCACG AATCTCCGGG TGAACTGCGT
CTGCAAGGTT TCCGTGACTT CCTAAGTGAG TTAGGTCTGG ATCTGAAAGG TGGTCTAGAG
CCATCACCAA CCGACTATGC CGATTTGGTA AAACAAATCG CAGAACGTCA GGACAAAGAG
CTGATTCAAA CCATGTTGCT GCGCTCAATG AAGCAAGCGG TCTACAACGC AGACAATGCA
GGCCACTTTG GTCTAGCGCT GAAACGTTAC GCGCACTTCA CGTCGCCAAT TCGTCGCTAC
CCAGACTTGC TGCTTCACCG CGCAATCAAA TATCTGATTG CTAAAGAAGA AGGCCGTAAC
CAAGATCGTT GGACACCAAC CGGCGGTTAC CACTACTCGT TTGACGACAT GGACTTCTAC
GGTGAGCAAT GTTCAATGAC AGAGCGTCGT GCAGACGACG CAACTCGTGA AGTGGCTGAT
TGGTTAAAGT GTGAATACAT GCAAGACCAT GTTGGCGACG AGTTGGATGG TGTTATTGCC
AACGTGACCA GCTTTGGTTT CTTTGTTCGT CTGACTGAGC TGCATATTGA TGGCTTGGTA
CACATTTCGA CGTTAGCGAA CGACTACTAC CAATTTGATC CTATTGGTCA AAGACTTATC
GGTGAAAGCT TCGGTAACAT CTATCGCCTA GGCGATGCGG TGAAAGTAAA AGTGCTTGCG
GTTAACTTAA ATGACAAGCA AATTGACTTT GAATTAATCG AAACAAGCCG TAAGCTACGC
GGCAAAGGTA AGACTGCGAA GAAACGCGCA GCGGATGCCA AACGTAAAGC GAAAGAGAAA
AAACGTGCGG CAACAAAAGG CGGCACTCGT GCAACACCTG CGATTGAACC AACCAAGCGA
CCAGAGCCTG CCGTAGCAGA AAAGCCTCGC CCAAATGGAG CAAAACGCAG TGACACTGAA
GGCGCTAAAA AGCCGAAAGT GAAAAAAGCA CGCAAGAAAA AGCCACACAG TAAGCCGAAG
AAGACTAAGC GTACTAAGAG TGACGCAGAG TAG
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| Protein sequence | MSDNIPNDPF ADRESKNYEN PIPSREFILE FLEEAGVPMN RNDLFEALKL KGEEQYEGLR
RRLRAMERDG QLVFTRRQCY ALPEKLEMVK GYVIGHKDGH GWVRPEGSVG KDNDIVLPHH
QMKHIIHGDY VLVQPTDNSK RGRREGRLVR VLEERNTQIV GRFFLEYGYS YVVPDDSRIS
QDILIPNEHK AGARMGNVVV IEITDRGSRS RGMMGKVVEV LGENMAPGME TQIAIRTHQI
PHDWPEAVDK QIENLGEEVP EEAKVGRVDL RDLPLVTIDG EDARDFDDAV YCEKKKSGGW
RLWVAIADVS YYVRTDSALD KEAINRGNSV YFPSQVVPML PEVLSNGLCS LNPQVDRLCM
VCEMTISDTG KLSGYKHYEA VMNSHARLTY NKVGAILEGD EELRMRYHAV VPHLEELHAM
YKILKEARDN RGAIEFETVE AKFIFNSDRK IESIEPVIRN DAHKIIEECM ILANIASASY
VEKAKEPALY RVHESPGELR LQGFRDFLSE LGLDLKGGLE PSPTDYADLV KQIAERQDKE
LIQTMLLRSM KQAVYNADNA GHFGLALKRY AHFTSPIRRY PDLLLHRAIK YLIAKEEGRN
QDRWTPTGGY HYSFDDMDFY GEQCSMTERR ADDATREVAD WLKCEYMQDH VGDELDGVIA
NVTSFGFFVR LTELHIDGLV HISTLANDYY QFDPIGQRLI GESFGNIYRL GDAVKVKVLA
VNLNDKQIDF ELIETSRKLR GKGKTAKKRA ADAKRKAKEK KRAATKGGTR ATPAIEPTKR
PEPAVAEKPR PNGAKRSDTE GAKKPKVKKA RKKKPHSKPK KTKRTKSDAE
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