Gene VIBHAR_00027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_00027 
SymbolaroB 
ID5556199 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp23978 
End bp25078 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content47% 
IMG OID640905523 
Product3-dehydroquinate synthase 
Protein accessionYP_001443314 
Protein GI156972407 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0337] 3-dehydroquinate synthetase 
TIGRFAM ID[TIGR01357] 3-dehydroquinate synthase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACGGA TTACGGTCAA TCTAGCAGAG CGTAGCTACC CAATCTCAAT TGGCGCCGGG 
TTATTTGAAG ACCCGGCGTA CCTTTCTCAA ATTCTTTCAA ACAAAAATGC CAATCAGAAA 
GTCGTCGTGA TCAGCAATGT CACGGTTGCT CCTCTGTACG CGGAAAAAAT TCTTAGCCAG 
CTTGAACAGC TCGGTTGTGA TGCCTCATTG CTTGAATTGC CTGATGGTGA GCAATACAAA 
AGCCTAGACA CGTTTAATCA AGTCATGAAC TTCCTGCTAG AGGGAAGCTA CGCACGCGAT 
GTAGTGATTA TTGCGCTAGG TGGTGGTGTG ATTGGTGACC TCGTTGGCTT TGCCTCAGCA 
TGTTACCAAC GTGGTGTGGA TTTCATCCAG ATTCCAACCA CATTGTTGTC TCAAGTGGAT 
TCATCTGTTG GTGGTAAAAC CGCAGTGAAC CATCCGCTTG GCAAAAACAT GATTGGTGCT 
TTCTACCAAC CTAAAGCGGT TATCATCGAT ACCAACTGTC TATCGACGCT CCCAGAGCGT 
GAATTTGCAG CGGGTATTGC TGAGGTGATC AAGTACGGCA TTATTTACGA TGGTGCTTTC 
TTCGATTGGT TGGAAGAGAA TCTTGATCGT CTATACGCAT TGGATGAAGA GGCACTGACT 
TACGCGATTG CACGTTGTTG TGAAATCAAA GCGGAAGTTG TGGCACAAGA TGAGAAAGAG 
TCAGGCATTC GAGCACTGCT GAACTTGGGC CATACCTTTG GTCATGCGAT TGAAGCTGAA 
CTTGGTTATG GCAACTGGCT ACACGGTGAA GCGGTATCTT CCGGTACAGT GATGGCGGCG 
AAAACCTCTC ACTTACGTGG ATTGATTTCG CAAGAGCAAC TGGATCGCAT CATCAATATT 
ATGCGCAGCG CTAAACTGCC TGTGCATACG CCAGACACAA TGAGCTTTGA TGATTTCATG 
ACGCACATGA TGCGTGATAA GAAAGTCTTA TCCGGTCAGC TGCGTTTAGT TCTGCCAACG 
GGCATCGGCA GTGCCGAAGT CATTGCAGAC ACACCGCAAG ATATCATCAA ACAAGCTATC 
GACTTCGGTC GTGACATTTA A
 
Protein sequence
MERITVNLAE RSYPISIGAG LFEDPAYLSQ ILSNKNANQK VVVISNVTVA PLYAEKILSQ 
LEQLGCDASL LELPDGEQYK SLDTFNQVMN FLLEGSYARD VVIIALGGGV IGDLVGFASA 
CYQRGVDFIQ IPTTLLSQVD SSVGGKTAVN HPLGKNMIGA FYQPKAVIID TNCLSTLPER 
EFAAGIAEVI KYGIIYDGAF FDWLEENLDR LYALDEEALT YAIARCCEIK AEVVAQDEKE 
SGIRALLNLG HTFGHAIEAE LGYGNWLHGE AVSSGTVMAA KTSHLRGLIS QEQLDRIINI 
MRSAKLPVHT PDTMSFDDFM THMMRDKKVL SGQLRLVLPT GIGSAEVIAD TPQDIIKQAI 
DFGRDI