| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_p08213 |
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| Symbol | |
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| ID | 5552722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009777 |
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| Strand | - |
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| Start bp | 40392 |
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| End bp | 42650 |
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| Gene Length | 2259 bp |
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| Protein Length | 752 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640898090 |
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| Product | conjugal transfer protein TraE |
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| Protein accession | YP_001436080 |
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| Protein GI | 156936729 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCTCTT TGGATGACGC CAAAATCATG GCAACCATAA GCCTTAACGG AATACCCTTC
GAGTCAGAAT CTTACAACAC GCTCAAACCT TCCTTTGAGC TCGTAAAAAA CATCCTTAGC
ACCCTCGCCA GAAAGTACGG CAGTCAGCTT GCCATTTGGA CACACATCGT CAAACGCAAA
GAACGCTTTG AAGCCAATTA TCGCTTCGAG AGCGACTTCA TGCAGCGCTT TTCTGATCGT
TACTTGCAAG ACTTTTCCGG TGAGGACTTT TTCAGTGTCC GGTACTACAT CACCTTTGTA
CTCAACTACA AAGGCACACT CACCGAAGGA GAAGATGAGC TTGGTGATAT TCTCAAGACG
GTATCAGCCG CGTTAAAGCG TTTTGATAGC AAAGTGCTTG AAGTCGGTGA CGATCACCGC
TGTGAACACG TTGAGTTTCT TTCTTACCTA CTCAACTACA ACGACCAACC TAAGCCACTT
ACGTCAGAAA AAGTGCGCAA TTATATCGGC CATAGTGATT GGCATTTCGG GCATGACTTG
CTCGAAGTTC GCAACGCGAA CAACGAGGCC ACCAAGTTCG CCACCTTCTT CGAGCTTGAT
GCGCTACCAA TCGCAACAGA AATGGGGATG TGGGATTTCA TTTTGAGTCA ACCAACTGAG
TTTATTCTGA CTCAGTCCAT GATCTTCATG CAGCCCCTTA AAGCTCAAAA GATGATTGAT
AGGCAAACCA ACTTCATTGA GTCCAGTGAC AACGCGGAAC ATGAGTTAGA AGAGCTGCAA
GCGGCGAGAG ACTATGTTGC CTCCGGCGCG GTCAGCTTTG GAGACTATCA TGCATCACTG
GCCGTCATTG GTGACTCACC AGACAAAGTG ATCATAGATA GCGCTGATTT AAATGGTCAG
TTCCTAGCCA AAGGCACGGT TTTAAAGCGT TCGAACCTCA AGTCTCAGTT CTCATTTTTA
AGCGCCCTTC CCGCGTCAAA GATGCGCATC AAGCCCTCAC CACGAACCAT CGCTAACCTT
GCCTCGACAT GGTCACTGCA CAACTACTCG ACAGGCAAAG CAACTGGCAA TCCAGTCGGT
GATGGCAGCG CTATCATTCC TTTAAAAACG CTGTCTAACT CCCTGTTCCA CATGAACTGT
CACGCCTCGG CAATAGGCAG AGACAATACG GGAGAAAAGA GCGCGGGACA CACCATGATA
CTCGGTGCAT CTGGCTCTGG TAAAACGACG CTAGAGGCCA CACTTACCGG CTTTTTTACT
CGCTTTGATC AGCAAATCTT TTGTATCGAC TATAAACGCT CTACCGAGCT GTTTATTCGA
GCGTTTGGTG GCGAATACTT TTCAATTAAG GAAGGAGAAG ATACAGGTAT CAACCCTTTC
CAATTGGAGC AGTCACCAAA ACTTGTGAGC TTCTTGAACC GTCTTGTTTG CCGCTTGGCG
CAAGACTCAC AAGGCCACAT CAGCGCTCAT GATGAGCAGG AAATCAAAGA TGCGATAGAT
AACGTGATGA ACTTTGACGC ACCGATGCGC GGCCTCAGTG TGATGCTGCA ATCCATTCAA
AATCCGGATT TGCGCATGAG GCTCAGTAAA TGGTGTCGCA GTGAAAACGG TAAGCTTGCT
TGGTGTTTGG ATTCACCTCA CAACCAGTTC AACCCGCAAG CAATGGATCG CATTGGCTTT
GATTCAACCC TGCTACTAGA GAAAGATTCA AGCGGTCATG TTCATCCTGC TAGCGAGCCC
GTTCTTGCCT GTTTGTTCTT CTTAAAAGAG CTCATGCAAG AGTCCGGTAA GCTACTGCAA
ACCATTGTGG AAGAGTTCTG GATGCCAGCG AACTTCCCTC TCACCCAAGC GGTGATGAAA
CGAGCGTTAA AAACCGGACG TTTAATGAAT GAGTTTATGG TGCTGTCATC ACAGTCACCA
GAAGATGCGA TTCATTGTGA AATCTTCCCT GCCATCGTCC AACAAACAGC AACCAAAGTG
TACTTGCCGA ACCCTGATGC AGAGTATGAG GCTTACCAGC AATGCAACCT GACCCAAGGC
GAGTTCGACA AACTCAAGGC GCTCGATAAA CAAAGCCGAA CCATGCTCAT TAAGCAGTCA
AACACCAGTT GTTTTGCAAA GCTGGATTTA GGTGGCTTTG ATGAGTTCCT ACCGATCATC
TCAGGCTCTA CCGATGACAT TGTGTTGTGT GAAACCATTC GCGCTGAGGT GGGCAATGAT
CCTGATTTGT GGATACCTGA ACTACTGAAA AGGAGATAA
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| Protein sequence | MLSLDDAKIM ATISLNGIPF ESESYNTLKP SFELVKNILS TLARKYGSQL AIWTHIVKRK
ERFEANYRFE SDFMQRFSDR YLQDFSGEDF FSVRYYITFV LNYKGTLTEG EDELGDILKT
VSAALKRFDS KVLEVGDDHR CEHVEFLSYL LNYNDQPKPL TSEKVRNYIG HSDWHFGHDL
LEVRNANNEA TKFATFFELD ALPIATEMGM WDFILSQPTE FILTQSMIFM QPLKAQKMID
RQTNFIESSD NAEHELEELQ AARDYVASGA VSFGDYHASL AVIGDSPDKV IIDSADLNGQ
FLAKGTVLKR SNLKSQFSFL SALPASKMRI KPSPRTIANL ASTWSLHNYS TGKATGNPVG
DGSAIIPLKT LSNSLFHMNC HASAIGRDNT GEKSAGHTMI LGASGSGKTT LEATLTGFFT
RFDQQIFCID YKRSTELFIR AFGGEYFSIK EGEDTGINPF QLEQSPKLVS FLNRLVCRLA
QDSQGHISAH DEQEIKDAID NVMNFDAPMR GLSVMLQSIQ NPDLRMRLSK WCRSENGKLA
WCLDSPHNQF NPQAMDRIGF DSTLLLEKDS SGHVHPASEP VLACLFFLKE LMQESGKLLQ
TIVEEFWMPA NFPLTQAVMK RALKTGRLMN EFMVLSSQSP EDAIHCEIFP AIVQQTATKV
YLPNPDAEYE AYQQCNLTQG EFDKLKALDK QSRTMLIKQS NTSCFAKLDL GGFDEFLPII
SGSTDDIVLC ETIRAEVGND PDLWIPELLK RR
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