| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4452 |
|---|
| Symbol | |
|---|
| ID | 5541965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5721435 |
|---|
| End bp | 5722556 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640896550 |
|---|
| Product | peptidase M24 |
|---|
| Protein accession | YP_001434486 |
|---|
| Protein GI | 156744357 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0006] Xaa-Pro aminopeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0539466 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000869693 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAGG TGACACTTAC GTCTCCACGA ATCCCACGCA TTCAGGCGGC TCTGCGCCGT
CATGGTTTCG ACGCGCTGGC TGTAGTTCCA GGAAGCAACC TGCGCTATCT TGCCGGTCTG
ACATTCCACG CCGGTCTGCG ACTGACCGTA ATGGTGACGC CGGTTGAGGG GCAACCAGCG
CTGGTGGTTC CCGGGTTGGA GTATGGGCGC GTGGCTGAGA CCACGGGCGC TGTGTTTCGA
TCCTATCCGT GGGGCGATGA TGAGGGACCG GGAAATGCCC TGATGCGCGC GGTGCGTGAT
ACCGGTCTGG GGCAGGGAAG CGTCGTCGGC ATCGAGCATA CCGTTATGCG CGTGTTTGAA
CTGCGTGCGC TGGAACAGGC GCTTCCCGGC GCACAGTTCG TTGATGCCAC GCCTCTCCTG
GCAGAACTGC GGATGGTTAA GGATGCGGCG GAACTGGAAG CGATGCGTGT TGCGGTGCAG
GTCATCGAAG CGACGTTGCA CCAGACGTTA ACACAGGTGC GGGCAGGCAT GCGCGAACGC
GACATCGCCG ATCTGTGGGA ACGCGCCATT CGCGCGGCTG GATGCCAGCC CGCCTTTGAG
ACGACGGTCG CCAGCGGACC GAACAGCGCC AACCCGCACC ATACCAGCGG TGATCGGGCG
TTGCAGGATG GCGACATGGT CGTGTTCGAC GGAGGCGCTA TGTATCAGGG ATATGTATCG
GACATTACCC GCACATGTGT AGTCGGGCAT CCATCGGACG AGATGCGTCG CGTGTACGAT
CTGGTGCTGG CGGCAAATGC GGCCGGACGG GACGCGGCGG CGCAACCCGG CGCGACCGGC
GCGTCGATCG ATGCCGCAGC GCGCCAGGTC ATTGAACGCG GCGGGTACGG ACCGTTCTTC
ATCCATCGCA CCGGGCACGG CATCGGTCTC GATGTGCATG AGCCGCCGTT CATCGTTGCC
GGAAGCCAGG CGCCGCTGCC GATTGGTGCG ACGTTTACCG TCGAGCCTGG CATCTACCTG
CGTGGCATAG GTGGTGTGCG CATCGAAGAT GACGTGGTCA TCACGGCTGA TGGCGCCGAG
TCGCTGACGA CATTCCCGCG TGAGATTCAC TCTATATCGT AA
|
|---|
| Protein sequence | MAQVTLTSPR IPRIQAALRR HGFDALAVVP GSNLRYLAGL TFHAGLRLTV MVTPVEGQPA
LVVPGLEYGR VAETTGAVFR SYPWGDDEGP GNALMRAVRD TGLGQGSVVG IEHTVMRVFE
LRALEQALPG AQFVDATPLL AELRMVKDAA ELEAMRVAVQ VIEATLHQTL TQVRAGMRER
DIADLWERAI RAAGCQPAFE TTVASGPNSA NPHHTSGDRA LQDGDMVVFD GGAMYQGYVS
DITRTCVVGH PSDEMRRVYD LVLAANAAGR DAAAQPGATG ASIDAAARQV IERGGYGPFF
IHRTGHGIGL DVHEPPFIVA GSQAPLPIGA TFTVEPGIYL RGIGGVRIED DVVITADGAE
SLTTFPREIH SIS
|
|---|
| |