Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4423 |
Symbol | |
ID | 5541936 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 5686364 |
End bp | 5687617 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640896521 |
Product | hypothetical protein |
Protein accession | YP_001434457 |
Protein GI | 156744328 |
COG category | [S] Function unknown |
COG ID | [COG2311] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00407884 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.808497 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCACG CAATAGCGCC AACCACAGCA CGTGAGCGAA TCGACCTGCT CGACATCCTG CGCGGATTTG CGCTGTTGGG TATCCTGATC GTCAACATGG GCATCTTCAG TTTTCCGTTC ATTGCAGCAT TCACCGGAAC GCCACGCGGA GAAAGCACAT TCGACCATGC CGTTGAGTTT CTTACCCATG CACTGGCGAC GGGCAAGTTC TACCCGCTCT TCTCCTTCCT TTTTGGGTTG GGGATGTGGT TACAGATGGA GCGCGTGCAG GAAGCCGGTG GCGCCCCGGC GCGCTTTATG GTCCGCCGGT TGTTGGTGTT AATGGGATTT GGCCTGGCGC ATGCCCTGCT GATCTGGAAT GGCGATATTC TGTTCATCTA TGCGCTGGTT GGTCTGGTTG CCCTGCTGTT TCGCAAGGCG CAACCGCGAA CGCTTCTCAT CTGGGCGAGC GCGCTGATCG CCATACCGAT CATCTTGAGC GCAGGCCTCA TCGTTCTGGG CATTCTGGTG GCAGGTCTTG CTCCAACCAA TGCAAGCGGC ATGGACGAGG TCATGACGCT CGTGCGCGAT CTGGAGCGGC AGGCTATCGA GACCTATGCG CGGGGATCGT GGGGGCAAAT CTTTGCCTGG CGCGCCATTG AGTGGCTGAT CGTCCTGGTA TTCTTCTTCT TGAGCGGAAA TGTCCTCCAG ATCCTGGCAA TCTTTCTGAT CGGCATGTAT GCCGGCAAGC GCCAGGTGCT CCAGCGCCTG ATGCAGTTGC CGGCAAACGA GCGTCGCCTG CCAGCCGGGA GGGTGTGCCT GGTCGTGGGG TTGGTCGCCA ATTTCGCGCT GACCTGGCTG ATGTGGACGG TGGATATGAC ATCGCCGCTG GCGGGATTGC CGTCGGTCCT TCTGCTTATC TTTGGTCCAG TGCTGAGTTA CGGTTACATG GCGGCATTCG TGGCGCTGAC CCGCCGGGAA GCCTGGCATC GCCGCCTGGA ACCTCTGGCA GCCGCAGGAC GAATGGCGTT GAGCAACTAC ATCGCACAAT CGATTGTCTG CACGCTCATC TTCTACAGTT ACGGATTGGG GCTGTTCGGT CAGGTGGGTG CGTTCGCCGG GCTGCTGATT AGCCTGACCA TCTGGCTGGT CCAACTGGTT ATCAGCGTCT TCTGGCTGAA GCGCTTCCGG TTTGGTCCGC TGGAGTGGGT CTGGCGCAGC CTGACCTATG GCGCGCCGCA GACTATGGCG AAGACGCGTC AGTTGGCGGC GTGA
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Protein sequence | MSHAIAPTTA RERIDLLDIL RGFALLGILI VNMGIFSFPF IAAFTGTPRG ESTFDHAVEF LTHALATGKF YPLFSFLFGL GMWLQMERVQ EAGGAPARFM VRRLLVLMGF GLAHALLIWN GDILFIYALV GLVALLFRKA QPRTLLIWAS ALIAIPIILS AGLIVLGILV AGLAPTNASG MDEVMTLVRD LERQAIETYA RGSWGQIFAW RAIEWLIVLV FFFLSGNVLQ ILAIFLIGMY AGKRQVLQRL MQLPANERRL PAGRVCLVVG LVANFALTWL MWTVDMTSPL AGLPSVLLLI FGPVLSYGYM AAFVALTRRE AWHRRLEPLA AAGRMALSNY IAQSIVCTLI FYSYGLGLFG QVGAFAGLLI SLTIWLVQLV ISVFWLKRFR FGPLEWVWRS LTYGAPQTMA KTRQLAA
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