| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4418 |
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| Symbol | |
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| ID | 5541931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5673061 |
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| End bp | 5675346 |
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| Gene Length | 2286 bp |
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| Protein Length | 761 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640896516 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_001434452 |
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| Protein GI | 156744323 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.868477 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0895088 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATCG CCGCCAACGC TCAAAACAAC GACGCGCCTG ACGAAGAGGT CATTTCCAGG
GAAAAAGTCG AGCAACTCAT CGAGGAGTTC GAGAACGAAG CAGCAACCCG AAAACTGAGC
GGCGCCTGGG CATGGATCGC CGGGATTGTT GCGGCGGCGC TCTCGATCTA TGCACTCTAC
TGGACGCAGG CGATCATCAC GACTCAGGTT TACCGTGCCA CGTTCCTGAT GCTCGTCCTG
GCGTTGACGT TCTTCTACTT CCCATTGCGC AAGGCTGCGC GCACGAAAGT GCCCTGGTAT
GATGTTGTGC TGGCAGCGCT TGGCGCTGCC AGTATGATTT ATTTGAGCCT CAATTTCCGT
GATGCGTTGC AGCGGGTCAC TCAACCCACG CCGACCGAAC TCGTGATGGG CGCCATTATG
CTGCTGCTGG TGTTGGAAGC GACCCGCCGC ACCACAGGTA TGGCGCTGAC ACTGGTAGCA
GTGTTCTCGA TACTGTACGC GCTCTTCGGG TATGTTTTTC CTGAACCGTT CGACCATCGC
GGAATCTCGC TGCAACGTCT GATCGGCACA AACTACCTGA CATTGCAGGG TGTGTTTGGC
GTGCCGCTCG ATGTGGCGGC CACATTCATC GTGCTGTTTA CGATCTATGG CGCGGTGCTG
GAGTACAGCG GCGCGGGCAA GTTCTTTATC GACTGGTCCT TTGCGGCGCT CGGCAAGTCG
AAGAGCGGCG CCGGCCCGGG ACGCACCGTG GCGGCGGCCG GGTTTTTGCT CGGCACCGTG
TCGGGCAGTG GCGTGGCAAC GACGGTCACA CTGGGATCGC TGTCGTGGCC TATGCTGCGC
AAGGCAGGGT ACGATAAGAC GGTCGCGGCC GGAATGCTGG CTGCATCCGG GATCGGCGCC
ACCCTCTCGC CGCCAACCCT TGGAGCAGCA GCGTTTCTGA TCGCCGAATA CCTGGATATT
TCCTATCTCG ATGTGCTGAT CATGGCGATT GTGCCGACGA TCCTCTACTA CCTGTCGATC
ATTCTGATGA TCGAAGCCGA CTCGCGCCGC ATGAAGACAC AGGCGGTCAC ATTCGAGAGC
GAATCGCTCT GGGAGTTGAC GCGCAAGTTT GGGTATCACT TCTCGTCGCT GTTTGCCGTC
GCCATTCTGA TGGGGTTTGG CATGACGCCC TTTATGGCGG TCTACTGGTC GATTGTCGTT
GCGTTCTTCC TGAGTTTTCT CCGTCCCGAA ACGCGCCTCT CCTCCCTGAA AGCGCTGGCG
TCCGGCGTCG CGCTGATGGC GCTGCTGATG GCGCTGGAAG TGACCGGTGT GCTGCCGCGT
ATGCGTCCAT CGGTGGCGAT CTTCTGGGGG TTAATGCTTA CCGTCGTGAT CGCGGCGGCG
ATGGCGCTCT ACCGGCGGGT GCGCGCCATT CCGGGAGAAG ATGAGAACAT GCGCATTCTC
AGGGCGCTGG AATATGGCGG GCGCAGTGTG GTGTCGATTG CCGCCACCAC CGCCTGCGCA
GGCATCATCG TCTCAGCCGT GACGTTGACC GGACTGGGGC TTAAGATTTC GGGCATGATC
GTGAGCCTTG GCGGCGGCAA CATCCTGATG ACGGTCTTCT TTGCAGCCAT TGCTGTCTGG
GTATTGGGAT TGGCGGTGCC GGTCACGGCA TCGTACATTC TGGCAGCGGT CATGATCGTT
CCCGCGTTGC GACAGGTGGG TGTGCCGGAA CCCGCTGCGC ATATGTTCAT TTTCTATTAT
GCGGTCCTGG CTGATGTGTC GCCGCCGACT GCGCTGGCGC CTATGGCTGC CGCAGCGATT
ACCGGCGGGC GTCCGTGGCC CACAATGTTT ATGGCATGGA AGTATTGTCT GCCCGGTTTC
CTGGTGCCGT TCATGTTTAC GATGACGACC GACGGGACGA GTCTGCTGCT GTTGTTGCAG
CAGGTTGGCA AAGATGTGGG CACGGTGACG CTGGCGTTCA AACCTGCCTG GTATGAGGCG
CTGGCGGCAG GAGGGTGGAT GACGATTGTG GTGACCTTCC TGACCAGTTG CCTGGCAGTT
GGCGCCCTGG CGGTCGCTTT TGGCGGATGG CTGCTCCGTC AGGCGAATCT TTTCGAGCGC
GTGCTGATGG GTGTTGCCGG TTTGGCGATG CTCTATGCCG ACCTGGGAGC GGACGCCGTT
GGGTTTGGGT TGTTTATTGT GGGCGTGCTG GTTCACGTGG TGCGGGTGCG CCAGATGCGC
AAGGCGGAGT CGGTCGCTGT CGCCGCAGTG GAAACGGACA CGTTCAGCGA GCGCTCGGTT
GGATGA
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| Protein sequence | MSIAANAQNN DAPDEEVISR EKVEQLIEEF ENEAATRKLS GAWAWIAGIV AAALSIYALY
WTQAIITTQV YRATFLMLVL ALTFFYFPLR KAARTKVPWY DVVLAALGAA SMIYLSLNFR
DALQRVTQPT PTELVMGAIM LLLVLEATRR TTGMALTLVA VFSILYALFG YVFPEPFDHR
GISLQRLIGT NYLTLQGVFG VPLDVAATFI VLFTIYGAVL EYSGAGKFFI DWSFAALGKS
KSGAGPGRTV AAAGFLLGTV SGSGVATTVT LGSLSWPMLR KAGYDKTVAA GMLAASGIGA
TLSPPTLGAA AFLIAEYLDI SYLDVLIMAI VPTILYYLSI ILMIEADSRR MKTQAVTFES
ESLWELTRKF GYHFSSLFAV AILMGFGMTP FMAVYWSIVV AFFLSFLRPE TRLSSLKALA
SGVALMALLM ALEVTGVLPR MRPSVAIFWG LMLTVVIAAA MALYRRVRAI PGEDENMRIL
RALEYGGRSV VSIAATTACA GIIVSAVTLT GLGLKISGMI VSLGGGNILM TVFFAAIAVW
VLGLAVPVTA SYILAAVMIV PALRQVGVPE PAAHMFIFYY AVLADVSPPT ALAPMAAAAI
TGGRPWPTMF MAWKYCLPGF LVPFMFTMTT DGTSLLLLLQ QVGKDVGTVT LAFKPAWYEA
LAAGGWMTIV VTFLTSCLAV GALAVAFGGW LLRQANLFER VLMGVAGLAM LYADLGADAV
GFGLFIVGVL VHVVRVRQMR KAESVAVAAV ETDTFSERSV G
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