Gene Rcas_4406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4406 
Symbol 
ID5541919 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5657871 
End bp5658524 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content61% 
IMG OID640896504 
Producthypothetical protein 
Protein accessionYP_001434440 
Protein GI156744311 
COG category[S] Function unknown 
COG ID[COG3828] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.192664 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.135313 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTCGG TTTTGTTCGT CTGGGGCGGC TGGGAGGGAC ACGAGCCAAA GCGGTGTGTC 
GATATTTTTG CTCCGCTGCT ACGCGCCGAA GGGTACGAGG TGACGATCAG CGACACGCTC
GACTCATACC TCGACCGCGA ACGCCTGCAC GCCTACAGCC TCATCGTTCA GGTCTACACC
ATGTCAACAA TCACGCGCGA GCAGGAGCGA GGGCTGCTCG ACGCCATCGC AAGCGGCGTC
GGCTTTGCCG GTTGGCACGG CGGCATGGCG GACGCATTCC GCCAGAGCAC CGACTATCAA
TTCATGGTTG GGGGGCAGTG GGTTGCGCAT CCCGGCAATA TTATCGACTA CACAGTGAAC
ATCATCAACC ACGACCATCC GATCACCGCC GGTTTGAACG ATTTTCGCAT GCACTCCGAA
CAGTACTATA TGCACGTTGA TCCGAGTAAT CACGTGCTGG CGACGACCAC ATTCAGCGGC
GAATACTGCC CCTGGATCGA AGGAGTGGTC ATGCCGGTCG TCTGGACGCG CATGTGGGGC
AAGGGGCGCG TCTCCTACTG CTCGCTAGGG CACGTGGCGC GCGACTTCGA CGTTCCCGAA
GCGCGCGAGT TGGTGCGGCG CGGCATGCTC TGGGCTAGCC GGAGCGAGCC TTGA
 
Protein sequence
MKSVLFVWGG WEGHEPKRCV DIFAPLLRAE GYEVTISDTL DSYLDRERLH AYSLIVQVYT 
MSTITREQER GLLDAIASGV GFAGWHGGMA DAFRQSTDYQ FMVGGQWVAH PGNIIDYTVN
IINHDHPITA GLNDFRMHSE QYYMHVDPSN HVLATTTFSG EYCPWIEGVV MPVVWTRMWG
KGRVSYCSLG HVARDFDVPE ARELVRRGML WASRSEP