Gene Rcas_4397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4397 
Symbol 
ID5541910 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5650058 
End bp5651485 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content56% 
IMG OID640896497 
Producthypothetical protein 
Protein accessionYP_001434433 
Protein GI156744304 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.050702 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAAAT CTTGGGAGTC TGCCAACGAG CATGATCCAA TCATGAAACG AGAGCTCCAC 
ACATCCACGC CGGATACCAA TGGGGCCGTC AATAGGCTAG CTCCTGAGGA CAGCCTCGTG
CATGACTGGT ATCGATTCGT TCTTTCGTTT CCGCCCCATC TGGTGCGGGA CTATCTGCAA
CGGTTCGGTA TCGGTCGAGA TCACACCGTT CTCGACCCGT TTTGCGGCAC AGGCACCACC
ATCGTTGAAT GCAAGAAACT CGGCATTCCG AGTATAGGAG TCGAGGCGAT GCCGTGGGCT
TATTTCGTGA CCACCGTCAA GACCGATTGG ACCCCTGACC CCGATGGTCT TGTGAGGCAC
GTCCGAGAAG TCGCAGCGTT GGCGAGAGAA CAACTCCAAT CGGAGGGAAT TGAAGATGAA
CCCCCGCTGC CTTTGTTCAG GAGTACCAGC ATGGTGGGTT CGCATCACCC AAAGGTGCTA
CGGAAGCTTC CTCCAGAAAA GGAAAAGCTT CTTCTGACGA ATTCCATTAG CCCACTGCCA
CTTCATAAAA CTCTGGTTCT ACTCGAGTGT CTCGATCAAT GTCGCGATGA GAAGTTCCGA
AACCATGAGC TTCTGGCGCT GGGCAAAGCC CTCGTCTTTT CGATCAGCAA TCTGAATTTT
GGTCCGGAAG TTGGTGTGGG ACCGGCGAAG CCCGATAGCC CGGTTGTTGC GCCGTGGTTG
GCATCGGTGG AGGCGATGGC CGCTGACCTC CGGCCCTTGC GACAGACCGA GGGCGCACCA
GCCGGAGTGC ATAACGCTGA CGCCAGGCGG ATTTCGGAGA TTCTCACCGG ATGCACGATC
GATGCCGTCG TTACATCCCC GCCCTACCCC AATGAGAAGG ACTACACGCG GACAACACGG
CTCGAATCCG TGTTGCTCGG TTTCATCAAG GATAAGGCCG ACCTCCGAGC CTTGAAGCGA
GGCTTGATCC GGTCTAATAC TCGTGGGGTT TACAAGGGCG ACGACGACGA CAGATGGGTG
TCCGACCATG ATGAAATCCA ACGCATTGCG AAGGCGATCG AAACGCGCAG GGTTAAGCTT
GGGAAAACAT CGGGCTTCGA GCGCCAGTAT CACAGGGTAA CGAAGCTCTA TTTCGGCGGA
ATGGCGCGTC ACCTGGCAGA TCTGCGCACA GTCCTAGCCC CAGGTGCACA GCTGGCCTAC
GTCGTTGGAG ATCAGGCATC TTACCTGCGG GTCATGATTC GCACTGGGCC GTTGCTGGCA
GATATTGCCG AATCGCTTGG CTATGATGTT GTGAATATCG ACTTGTTTCG CACCCGTTTG
GCAACAGCAA CAAAGGAGCA ACTACGTGAA GAAGTCGTGA TACTGCGATG GCCTGGTCCC
AGACAGCGGC GGCTTTCGGG CGTAAGGGCG ATCAAAGTCC CACGGTGA
 
Protein sequence
MPKSWESANE HDPIMKRELH TSTPDTNGAV NRLAPEDSLV HDWYRFVLSF PPHLVRDYLQ 
RFGIGRDHTV LDPFCGTGTT IVECKKLGIP SIGVEAMPWA YFVTTVKTDW TPDPDGLVRH
VREVAALARE QLQSEGIEDE PPLPLFRSTS MVGSHHPKVL RKLPPEKEKL LLTNSISPLP
LHKTLVLLEC LDQCRDEKFR NHELLALGKA LVFSISNLNF GPEVGVGPAK PDSPVVAPWL
ASVEAMAADL RPLRQTEGAP AGVHNADARR ISEILTGCTI DAVVTSPPYP NEKDYTRTTR
LESVLLGFIK DKADLRALKR GLIRSNTRGV YKGDDDDRWV SDHDEIQRIA KAIETRRVKL
GKTSGFERQY HRVTKLYFGG MARHLADLRT VLAPGAQLAY VVGDQASYLR VMIRTGPLLA
DIAESLGYDV VNIDLFRTRL ATATKEQLRE EVVILRWPGP RQRRLSGVRA IKVPR