| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4348 |
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| Symbol | |
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| ID | 5541861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5599697 |
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| End bp | 5600896 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640896454 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001434390 |
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| Protein GI | 156744261 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.866985 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGAAG GCAGATCCAT GACCACCGAG ATCGTGGAGC AGACACGGCA GGCGTGGGCG
CAAACGCTCG AATACCTCCT CGACATTGGG CGCACACGCG GGTTCCTCAC CTATAACGAA
ATTCTTGAAG CGCTTCCCCA ACCCGAATAT CACGTTGCCG ATGTTGATCA ATTGTACGCT
TCATTGCAGG CGGAAGGCAT TCGGGTGGTC GAGACCCCGC TCGATATGAG CGACCACGGC
GCGGTCGGCG ATGATGAATT GCTGGCGGAA ATGCCGGACC TGACCGATGT GGCGCTCGAT
GATCCGGTTC GGATGTATTT ACAGGAGATT GGTCAGGTGC CATTGTTGTC GGCAGAGCAG
GAAGTGATGC TGGCAAAGGC GATGGAGGCC GGGCATCGCG CCCGGCGCGC GCTTGAGTGC
GAGGAGTATA GCTCCTGGCA GGAACGGATG ATGTACGAAC AGCAGGTTGC ACAGGGGAAT
GAAGCGCGTC AGCACCTGAT CCAGGCCAAT CTGCGTCTGG TCGTCTCGAT CGCCAAAAAA
TATACGTCGT ATGGTCTGAC GATGATGGAC CTGGTGCAGG AAGGCAATAT CGGACTTATG
CGTGCAGTCG AAAAGTTCGA CTATACCAAG GGGCACAAGT TCTCTACCTA CGCCACCTGG
TGGATTCGCC AGGCGATCAC GCGCGCCATC GCCGATCAAA GCCGCACCAT CCGCCTGCCG
GTGCATATGG GTGAGGCGAT TAGTCAGGTC AAGCGCGCCT CGCATAAACT TCAGCAGATG
ATGCAGCGCG AACCGACACC GGAAGAGATC GCCGATGCGA TGGGCATCAG TTCGACGAAG
GTGCGTCGCA CGCTCGAAGC CTCGATGCAC CCGCTATCGC TGGAAATGCC GGTTGGGCAG
GAAGGCGAGG GCCGTATGGG CGACTTTATC GAAGATGATC GTATCTCGAC CCCGGCTGAA
GCTGCAGCTG CATCGATGCT GCGCGAGCAA CTCGAAGAGG TGCTGCAAAA ACTCCCTGAA
CGGGAACGGA AGATTATTCA GTTGCGCTAT GGGCTGAAGG ATGGTCGTTA CCGCACACTG
GAAGAAGTCG GTATGGAATT TGGCATCACC CGCGAGCGCA TCCGGCAGAT CGAAGCCGTG
GCGCTGCGGA AATTGCGCCA TCCCCACCTT GGCAAGAAGT TGCGCGGTTA CCTCGATTGA
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| Protein sequence | MQEGRSMTTE IVEQTRQAWA QTLEYLLDIG RTRGFLTYNE ILEALPQPEY HVADVDQLYA
SLQAEGIRVV ETPLDMSDHG AVGDDELLAE MPDLTDVALD DPVRMYLQEI GQVPLLSAEQ
EVMLAKAMEA GHRARRALEC EEYSSWQERM MYEQQVAQGN EARQHLIQAN LRLVVSIAKK
YTSYGLTMMD LVQEGNIGLM RAVEKFDYTK GHKFSTYATW WIRQAITRAI ADQSRTIRLP
VHMGEAISQV KRASHKLQQM MQREPTPEEI ADAMGISSTK VRRTLEASMH PLSLEMPVGQ
EGEGRMGDFI EDDRISTPAE AAAASMLREQ LEEVLQKLPE RERKIIQLRY GLKDGRYRTL
EEVGMEFGIT RERIRQIEAV ALRKLRHPHL GKKLRGYLD
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