| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4329 |
|---|
| Symbol | |
|---|
| ID | 5541842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5582490 |
|---|
| End bp | 5583656 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640896435 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001434371 |
|---|
| Protein GI | 156744242 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3597] Uncharacterized protein/domain associated with GTPases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.461549 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGCT GGAGCGCCCT TGGCAATCTG TGGTCGACCG TGCGGGAGAT CGATGTCAAC
GCCATCCGGG ACGAAGCAGA ACAACCGCTC AGTATCATCG CGGTCGGGCA CGACACAGCA
CTGGCGGCAA TCGACGCGCT GGCGCGCCGC GGTCCCAACC GCTATCCTCC GACCGGCGTT
GCGCCTCTGA CGTCACTTTC ATTGCGTGAT GCTGCGCGCT TTCCTGAGCG CATGAACGCC
GCCGATATAC TCATCCTGGC AGTTGACAGC CGGGTCGGAT TGACGGAACG GGATGCTGTC
GCACTGGCGC AGATTGATCG GTTGCCGCGC CCTGCCCTGC TGGTTCTTCT CTTCGGCACG
CGTCTCGCAC CGGGAAGCGC GCCCCTTCCG TCGTCAGCGG CGGCGCACAC CGTCATCATC
CCGAACATCG ACCATACCGA TGCTGCGCTG AGGTTCACCA ACGAACTGCT CGAACGTCTG
CCGGCGACGC ATCATCTGGC GGCAGCACGG CGGTTACCGG GCATCCGTGC CGCTTATGCA
CGTCGCCTGA TCGACTCGAC TGCGATGACG AACGCCACCT ACGCGCTGGC GTCGAGCCTG
CCGGAACAGA TCCCGATCCT GGGGATACCT TTTGCCGTCG CCGATATGCT GGTACTCACC
AAAAATCAGG CGATCATGGT TTACCGCCTG GCGCTGGCGT ATGGCGCCCC GCCCGATTTC
CGCCAGCGCA TCGCCGAGGT GATGCCCGTC GTTGGCGGCG CCTTCGTCTG GCGCGAAATC
GCCCGCACGT TGGTCGGTCT GGCGCCGGTC TGGGGAGTCG TGCCGAAAGT CGGCATCGCC
TATGCTGGCA CATATGCAAC CGGCGTGGCA GCCTGGCGCT GGTATGAAAA GGGTGAACTG
ATCCCACGCG AGGAACTCAA ACGCATTGCC CGCGAAGCGC AGACAATCGG GCAGGAAAAA
GCCCGCGAGG TGATCGCACA GGCACAGGAC ACCCGGGAAG CGACAGGCAA TGCCGTCAAA
GAAGCCGCAA GTCACATCAA CAGCCTGGGC AACCGGATCC GACAGCGCAG CCATCGAACG
CTGCGACGCG TGCGCGAGCG TCTTCCGACG CGCATGCGTC TGGCACGCAG CGCCGACGAT
TCTGATCGAC TGCCGGAGGA GCATTGA
|
|---|
| Protein sequence | MSRWSALGNL WSTVREIDVN AIRDEAEQPL SIIAVGHDTA LAAIDALARR GPNRYPPTGV
APLTSLSLRD AARFPERMNA ADILILAVDS RVGLTERDAV ALAQIDRLPR PALLVLLFGT
RLAPGSAPLP SSAAAHTVII PNIDHTDAAL RFTNELLERL PATHHLAAAR RLPGIRAAYA
RRLIDSTAMT NATYALASSL PEQIPILGIP FAVADMLVLT KNQAIMVYRL ALAYGAPPDF
RQRIAEVMPV VGGAFVWREI ARTLVGLAPV WGVVPKVGIA YAGTYATGVA AWRWYEKGEL
IPREELKRIA REAQTIGQEK AREVIAQAQD TREATGNAVK EAASHINSLG NRIRQRSHRT
LRRVRERLPT RMRLARSADD SDRLPEEH
|
|---|
| |