Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4301 |
Symbol | |
ID | 5541812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 5548521 |
End bp | 5550260 |
Gene Length | 1740 bp |
Protein Length | 579 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640896407 |
Product | integral membrane sensor signal transduction histidine kinase |
Protein accession | YP_001434345 |
Protein GI | 156744216 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAATCTAT CGATCCGCAC CAAATTGCTG GCAGCGCTCG GCGTTGACCT GATCCTCATG CTGGTGCTGG GCAGTTTTGC CCTGCACCAG ATGAGCATTA TGAACCAGAA AGCCGATTTT GTCGTCAACC AGACGATCCT TTCGATTGAT CTGGTCAACG CAATGAACGA TGTGCTCCTG AATTACCGTA CCCGACAGAT GGAGTACATC CTCAACGCCG CCCCTGCCGA CAAACAGCGC ATCGAGAAGG AACTGCTGGA CCTCGAAACG CGCATGGACG GCATTTTCCG CAATTACAGC GCCAACTATC AACCGGATGC GACGGAACGC CTGATCTTTG AACAGACGCA GCAGGACTGG CAGCGCTACG TGTTTTTGAC ACACACCCAG TTTCTGCCGG CGAATCGCAA CAGCAACACC GGGAATGTGC ATCCATCGTT TGGGCGGTTG TCACCGCTGT ATGGCAGCCT GCAAACGAAC ATGCAGAAGA TCAGGGCGCA GAGTCAGGCG CGCGCCGAGG CGGCGCGCGC AAGCGTCGAA ACGGCGTATT CCACCTCACG CTTTGTGATT GTGAGCGAAA CTATTCTGAC CGTATTCGTC TCGGCGGTGA TTGGACTGAC CCTCTCCGGC AATATTGCCC GCCGCATTCG CACGCTGCGC GATGCAACCA TTGCCGTTTC CGGCGGCGAT CTGAGCCGGC AGGTGTCGCT GCGCGGCGGC GACGAACTGG TGTTGCTGGC GAACAATTTC AACCTGATGG TCGCCAGCCT GCGGCAGCAA CGCATGCTGC TCGAAGAGCG CAATGCCGAA CTCTCAGCGA GCCTGGAGAC GCAACAACGG TTGATGGAAG ACCTGGTGCA GCGCAAACAG GCGGAGGAAG CGGCGCATCG CGCGCAGGCG GCGGCGGAAG CAGCCAGCCA CGCGAAGAGC ATGTTCCTGG CGACGATGAG CCACGAACTG CGCACGCCGC TGAACGCGAT CCTGGGGTAT GTTCAGTTAT TGCACCTCGA AGCGCAAATC CATGGACGAT CCGAGATGCT CCCCGATCTG GAGCGCATCC GTTCGGCGGG CAAGCATCTG CTTACCATCA TCAGCAATAT TCTCGACTTC TCGAAGATTG AGCAGGGCCG GATGAATGTC GAGATCGACA CCTTCAATGT GAGCGTGATT GCGCACGAAA TGATCAGCAT TATCGAACCG CTGGCGCGCA ATCGCAACAA CACGCTGACC CTCACCTGCC CCCCAGACAT CGGTATGATG CAGTCCGATG CGGGCAAAGT GCGTCAAATT CTCTTCAACC TGTTGAGCAA CGCGGTTAAG TTTACCGATA ACGGCACGGT GGCGCTGACT ATCGAACGTG AATGTTGTTC TGACGGCGAT TGGGTGCGCT TCAGCGTCGC TGACACTGGC ATTGGCATGT CGCCAGAACA ACTGACGCGT CTGTTCCAAC CGTTCACACA GGTGCATCAG AGCCACTCGT CGCACGCACA TCGCGGCACG GGCCTTGGGC TGGCGCTCAG TCAACAGTTA TGTCGCCTGC TCGGCGGCGA CATTTCGGTC ACCAGCGAGG TCGGCAGAGG ATCGGTCTTC ACTGTGCGTT TGCCAGCAGT CATCAGCACT GCCCATACCG CCGATGTACG TCTCGATTTT GCGCAACACA TACGAAGCGC GACTCGCCAC GACGTGGATC ATGCCACTAC GGCGCCATCA CCGTACACAA CGACAACGCT CAGCGCGTAG
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Protein sequence | MNLSIRTKLL AALGVDLILM LVLGSFALHQ MSIMNQKADF VVNQTILSID LVNAMNDVLL NYRTRQMEYI LNAAPADKQR IEKELLDLET RMDGIFRNYS ANYQPDATER LIFEQTQQDW QRYVFLTHTQ FLPANRNSNT GNVHPSFGRL SPLYGSLQTN MQKIRAQSQA RAEAARASVE TAYSTSRFVI VSETILTVFV SAVIGLTLSG NIARRIRTLR DATIAVSGGD LSRQVSLRGG DELVLLANNF NLMVASLRQQ RMLLEERNAE LSASLETQQR LMEDLVQRKQ AEEAAHRAQA AAEAASHAKS MFLATMSHEL RTPLNAILGY VQLLHLEAQI HGRSEMLPDL ERIRSAGKHL LTIISNILDF SKIEQGRMNV EIDTFNVSVI AHEMISIIEP LARNRNNTLT LTCPPDIGMM QSDAGKVRQI LFNLLSNAVK FTDNGTVALT IERECCSDGD WVRFSVADTG IGMSPEQLTR LFQPFTQVHQ SHSSHAHRGT GLGLALSQQL CRLLGGDISV TSEVGRGSVF TVRLPAVIST AHTADVRLDF AQHIRSATRH DVDHATTAPS PYTTTTLSA
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