Gene Rcas_4275 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4275 
Symbol 
ID5541786 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5517169 
End bp5518233 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content63% 
IMG OID640896382 
ProductDNA polymerase III, delta prime subunit 
Protein accessionYP_001434320 
Protein GI156744191 
COG category[L] Replication, recombination and repair 
COG ID[COG2812] DNA polymerase III, gamma/tau subunits 
TIGRFAM ID[TIGR00678] DNA polymerase III, delta' subunit 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0379488 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGAAT CGTCAGACAA CTGGGGCATG ATCGGGCACG AGTGGGCGGT CGAGTTTCTG 
CGACGCTCGA TTGCCGGCAA GCGCCTGGCG CATGCGTATC TCATCGGCGG ACCGGAAGGC
GTAGGGAAGG CGCTGCTCGC GCTTCGGTTG GCGCAGGCGC TCAACTGTGA ACGGTCAGCC
CTCGATCCGT GTCTGCGCTG CCGGGCGTGT CAGCGGATCG AGCGTGGCAA CCACCCGGAT
GTCCGCATCG CTGGCATGGC AACGCAGGCA GCCGGGGCAA AATCTGACGA TGCGGCGCGG
CAGAAAGAGT TGAAGATCGA TACGGTGCGC GAGTGGCAAC GCGATATGAT GCTGAAGCCC
TACGAGGGTC GGCGGCGCGT GTTCATTCTG CACGATGCAG AGAAGTTGAA CGAATCTGCA
TCGAATGCGA TGCTGAAAAC CCTGGAAGAG CCGCCTCCCT ATGCAACGAT TGTTCTGGTT
GCGCACACGG TGGGCAGCCT CCTGCCGACG ATTGTTTCGC GCTGTCAGTT GCTGCGGCTG
CGCCCGTTGC CGCGCGCGCA GGTGGCGGCG GCTTTGCGCG AGAAGCGTAA CCTGGCGGCC
GGCGATGCCG AACTCCTGGC TGCCTGGAGC GGCGGACGGA TCGGGTGGGC ATTGCGTATG
GTCGATACAC CGGATGAACT GGCGGCGCGC CGGGATCAAC TGGCGGAACT GCTGGCGCTT
GCCGACCAAC CACTGGCAAC CCGTCTGCGC TGGGCGGAGG AACAGGCGAA GGCGTATCGC
GCCGGCGATC AGACGGCCGT GTTCGAGACG CTCGATCTGT GGCAGAGTTG GTGGCGCGAT
GTGCTGCTGA CTGCCGCCGG TTGTCCGCAG GCGGTTGTCC ATATCGACCG CCGTGACGAA
CTGGTAGCAG CAGCGGCGCA GCACACCGTT CCTGATCTTC ACGCCTTCGT ATCAGGCATT
GCTCTGGCAG CGCAGCGTCT GCGCGATAAT GTGAATCCTC AACTGGCACT GGAGGGTGTG
GCGCTGGCGA TACCGGAACG ACGAACGCCA CAATCAAGGA AATGA
 
Protein sequence
MIESSDNWGM IGHEWAVEFL RRSIAGKRLA HAYLIGGPEG VGKALLALRL AQALNCERSA 
LDPCLRCRAC QRIERGNHPD VRIAGMATQA AGAKSDDAAR QKELKIDTVR EWQRDMMLKP
YEGRRRVFIL HDAEKLNESA SNAMLKTLEE PPPYATIVLV AHTVGSLLPT IVSRCQLLRL
RPLPRAQVAA ALREKRNLAA GDAELLAAWS GGRIGWALRM VDTPDELAAR RDQLAELLAL
ADQPLATRLR WAEEQAKAYR AGDQTAVFET LDLWQSWWRD VLLTAAGCPQ AVVHIDRRDE
LVAAAAQHTV PDLHAFVSGI ALAAQRLRDN VNPQLALEGV ALAIPERRTP QSRK