| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4270 |
|---|
| Symbol | |
|---|
| ID | 5541781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5511934 |
|---|
| End bp | 5513046 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640896377 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001434315 |
|---|
| Protein GI | 156744186 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0392] Predicted integral membrane protein |
|---|
| TIGRFAM ID | [TIGR00374] conserved hypothetical protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.57819 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGTTC CGACGGAACC ACGAGAGGAC GGTTCAATGA TGATCAACGA GCGAGTCGGC
GATGCGGGCG CCGACGAATC GGTCAACCTG CCTGAGACTC CCGAAATTCA GGAAGTCGAA
CGTCAGGGGT TCTCGCTGGC AAAGGCGTTG CGCAGCCCGC GTACCATTAT CTCGTTTGCG
CTTGCAATTG CGATTGTCGT ATTCGCCGTG CGTGGCTTCG ATATCGATGT GCAGCAGACA
TGGCAGTATA TGCGTGGCGC CGATGGATGG CTACTGCTGG CAGGCTTCGG CATCTTCTAC
CTGACGTTTC CGTTGCGTGC CGTGCGCTGG CGGATGCTGC TGGAAAATGC CAATGTGCCG
GTGCGCGAAG GACGCAAAAG TTGGGCGTCG CTGCCTGCGC TGATGGAATA TATCTACCTC
TCGTGGTTTG CCAACTGTGT GGTGCCGGCC AAACTCGGCG ATGCCTACCG CGGGTATCTG
CTCAAACAGA ATGGGCGTGT GTCGTTTTCG GCGACGTTTG GCACGATCTT TGCCGAGCGC
CTCCTCGATA TGCTGGGATT GTTCGGGTTG CTGGTGTTGT CGGCATGGTT TACGTTCGGC
GCGCAGATGC CGGAGAGCAC CCGGGTGGTG TTCGGCTTTG GCGCGCTGCT GGTCGTTATG
ATTGTCAGCG GTCTGGCGGG GATGCGCTGG TTAAGCCCGG TCATTCGACG CTTTATCCCG
AAACGTCTGA TCGGGGTGTA TGGCAACTTT GAACACGCAG CGCTGCGCTC GTTCCGTCCG
GGCATCCTGC CCAAACTGAT CGCGCTGACG TCCGGCGTCT GGCTGCTCGA AGGGATGCGG
CTCTATTTTG TGATCCAGGC GCTCAGCCAC GAAGGGTTGT CGCTGCCGCT GTCGGCGATC
ATCTTCGTTG CGCTGGCGTC GTCGTTGCTG ACAGCCATTC CCTTCACTCC AGCCGGTCTT
GGCGTTGTCG AAACGGTGAT TACGGGCGTG CTGACGTTCT TCAAGGTCGG AACGAGCCTT
GGCGGGGCTG TCACGTTGCT CGACCGGGTC ATCAATTTCT GGAGCATTGT CGTGATCGGG
TTCGTTCTGT ACCTGGTCAG TAAACGGAGG TGA
|
|---|
| Protein sequence | MEVPTEPRED GSMMINERVG DAGADESVNL PETPEIQEVE RQGFSLAKAL RSPRTIISFA
LAIAIVVFAV RGFDIDVQQT WQYMRGADGW LLLAGFGIFY LTFPLRAVRW RMLLENANVP
VREGRKSWAS LPALMEYIYL SWFANCVVPA KLGDAYRGYL LKQNGRVSFS ATFGTIFAER
LLDMLGLFGL LVLSAWFTFG AQMPESTRVV FGFGALLVVM IVSGLAGMRW LSPVIRRFIP
KRLIGVYGNF EHAALRSFRP GILPKLIALT SGVWLLEGMR LYFVIQALSH EGLSLPLSAI
IFVALASSLL TAIPFTPAGL GVVETVITGV LTFFKVGTSL GGAVTLLDRV INFWSIVVIG
FVLYLVSKRR
|
|---|
| |