| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4251 |
|---|
| Symbol | |
|---|
| ID | 5541762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 5492720 |
|---|
| End bp | 5494246 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640896358 |
|---|
| Product | deoxyribodipyrimidine photolyase-related protein |
|---|
| Protein accession | YP_001434296 |
|---|
| Protein GI | 156744167 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3046] Uncharacterized protein related to deoxyribodipyrimidine photolyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGATA CGCCCGTTAC CGTCTGGATT CTCGGCGACC AGTTGCTTCG CGCGCATCCG
GCCATCGAGG CGGTCGAGGC GCAGGCAGGG CGACGGAATA TGCGTATTGT GCTGGTCGAG
AGTGATGCGC GCATCGCGCA GATGCCGTAC CAGCGCAAGA AGATTGTTCT GATCCTCAGC
GCCATGCGCC ACTATGCGGC GTCGCTGCGC GAGCGCGGAT ACCTGGTCGA TGAGGTGCGC
GCGCCGTCGT TTGTCGCAGG GTTGCAGCGC CACATTGCGC AGCATCGGTC GCAACGCCTG
GTGACGATGG CAGCCGCCGA GTATGAGACC CGTCGCTTTC AACAGGATTA TCTGAGCCAG
GCGCTTGGCA TTTCGGTCGA GGTGTTGCCC AACACCCAGT TTCTCACCGG TCGGCGCAAT
CCGTTCCCCG ATGTCGAACC TTCGCAGCGC GTGATCATGG AGCGCTTCTA CCGTGCGATG
CGCCGCCATT TTGACGTGCT GCTCGAACCA GATGGATCAC CGACCGGCGG TGCGTGGAAC
TTCGACCGGT TGAACCGTCG TCCGTTGCCG CGTTCGGTAG CGCCGCCGCC GCCGTTGACC
TTCGAGCCGG ATGCGATCAC GCGCCGGGTC ATCGCCGAAG TCGAGGCGCG CAGCGGCGGG
GTCGGCACAG CAACCGGATT TGCGCTCGCG GTTACCCATG CGCAGGCGGA AGCGGCGCTT
GCCGATTTCG TTGCGCATCG CCTGGCAGCG TTCGGACCCT ACGAAGATGC GATGAGCGCC
GCGCATGATG TGCTGTTCCA CTCGATGCTC TCCCCCTACC TCAACATTGG GCTGCTCGAA
CCGTTGCAGA TAGTGCGCAC CGTTGAGGAA GCGTATCGCG CCGGCGCCGC TCCGATCCAG
TCGGTCGAAG GGTTCGCGCG CCAGATCATC GGCTGGCGTG AGTACATCTA CTGGCAGTAC
TGGCGATTGA TGCCCGGTTT GCGCGACGCG AACGCCTGGA ATGCAACGCG CCCGCTACCG
CGCTTTTTCT GGAGTGGCGA CACCGATATG CGTTGCCTGC GTCACGTCAT TGAACGCGCG
ATTGCGACCG GCTACACCCA CCACATCGAA CGTTTGATGA TCGTCTGCAA CTTTTGCCTG
CTGGCAGGAA TCCGTCCCTC AGAGGTCAAC GACTGGTTCC TTGCGCACTA CGTCGATGCC
TATGATTGGG TGATGCAGCC GAATGTGATC GGTATGGGGC TGAACGCCGA CGGTGGGTTG
ACGGCGACCA AACCGTACAT CGCTTCGGCT GCGTATATCA GAAAGATGAG CGATTACTGC
GACGGATGTC GCTATGACCC AAAGCGGCGC ATTGGACCGG ATGCCTGTCC GTTCAACACA
CTCTACTGGA ACTTTCTGAT CCGGCACGAA GCGACACTCC GCGCCAATCC GCGCATGGGT
CCGGCGGTGC TGGGACTGGC GCGGTTCGAC GCCTCCGAGC GTGAGGCGGT GACGCGGCAG
GCGGAGATGG TGTTGGGGGA GAACTGA
|
|---|
| Protein sequence | MNDTPVTVWI LGDQLLRAHP AIEAVEAQAG RRNMRIVLVE SDARIAQMPY QRKKIVLILS
AMRHYAASLR ERGYLVDEVR APSFVAGLQR HIAQHRSQRL VTMAAAEYET RRFQQDYLSQ
ALGISVEVLP NTQFLTGRRN PFPDVEPSQR VIMERFYRAM RRHFDVLLEP DGSPTGGAWN
FDRLNRRPLP RSVAPPPPLT FEPDAITRRV IAEVEARSGG VGTATGFALA VTHAQAEAAL
ADFVAHRLAA FGPYEDAMSA AHDVLFHSML SPYLNIGLLE PLQIVRTVEE AYRAGAAPIQ
SVEGFARQII GWREYIYWQY WRLMPGLRDA NAWNATRPLP RFFWSGDTDM RCLRHVIERA
IATGYTHHIE RLMIVCNFCL LAGIRPSEVN DWFLAHYVDA YDWVMQPNVI GMGLNADGGL
TATKPYIASA AYIRKMSDYC DGCRYDPKRR IGPDACPFNT LYWNFLIRHE ATLRANPRMG
PAVLGLARFD ASEREAVTRQ AEMVLGEN
|
|---|
| |