| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4217 |
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| Symbol | |
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| ID | 5541728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5455439 |
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| End bp | 5457181 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640896324 |
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| Product | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase |
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| Protein accession | YP_001434262 |
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| Protein GI | 156744133 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
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| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.273417 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.202261 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAATC GCAACATCCT GTACGCAACG ACACTGGTTG ATGAACTCGC CCGCGCCGGG
TTGCGCCATG TTTGCCTGGC GCCAGGCTCG CGCAATACGC CGCTGGTGCT GGCATTCGCC
CGGCACCCTG CGATCCGGGT CTTTTCGCAC CTGGACGAGC GCAGCGCGGC GTTCTTTGCG
CTCGGCCTTG CGCTGGCGAC CGATACGCCT GCCGCCGTGG TCTGCACCTC CGGTTCGGCA
GCGGCGAATT TCTTCCCGGC GATTGTCGAG GCGCATCAGG CAGGTGTGCC ACTCCTGGCG
CTGACAGCGG ATCGCCCGCA TGAATTGCGC GACAGCGGCG CCAACCAGAC GATTGATCAG
GTGAAGATGT TTGGCAGTTT TGCGCGCTGG AGCGTTGATG TGGCGTTGCC GGAGGCGATG
CCGCCTCCAG TTGCGCTACG CAACCTGCGG ACGCTGGCAG CGCGCGCGAT GGCGATTGCT
GGCGGCGAGC CACGCGGCGT CGTGCATCTG AACCTGCCGT TCCGTCCGCC GCTGGAGCCA
ACCCCAATGC CAGGCGATCT GACCGAGCCT CCGGCGGCGG CACAGCCGCG TGACGATGGA
GCGCCATACA CATGCTTCCT GCGGTCTGCA CCCCCGGCGC CGCCGGAAGC GGTTATCGAA
CCGATCGCTG CCGTTCTGGA ACAGCACGAA CGCGGTCTGA TCGTCTGCGG TCCGCGTTGC
CCTGGCGGGG CATTTGGCGC CCTGGTGAGC GAACTGTCGC AGCGCACCGG CTACCCGGCG
CTGGTTGACG GCGTGTCGGG GGTGCGCTTC GGCTATCCCG GCGTGATCGG CGGGTATGAG
ACCTTCCTCT TCGGCGAGCA TGCCTTCCCG CCGCCTGAAG TCGTGCTGCG GTTTGGCGCG
GTCCTCACCT CGAAATGGCT CAATCAGTAC CTCGACACGG CGGCATCGCC GGTTGTCATC
CATGTGCGCG CCAGTGGCGT ATGGGCAGAT GATAGCCATC GCGTGAGCCA TTTCGTCGTG
GCTGACGAAG CCGCCTTCAT TCGCGCGCTG ATCCCGCGCC TGACCGAACG TCAGAGCGCC
TGGAGGCAGC GTTTCGTCGA AGCGGAAGCG CGAGTGTGGG CAGCCGTTGA AGCCGGGATC
GCCGATGAGC CGTACTTTGA TGGCGGCGCA GTGTATGACG TGATCGACCT GTTGCCCGAA
GGTGCATCGC TTTTCGTTGG CAACAGTCTG CCGGTGCGCC ATCTTGATCA GTTTGGGAAG
CCGGGAGTGC GACATATTTG CGCATTTGCA AACCGTGGCG CATCTGGGAT TGACGGGAAT
ATCTCGACGG CGCTTGGCAT CGGCGCAGGA CGACCAGACG CGCCGCTGGC GGCGATTGTT
GGCGACATTA CGTTCTACCA CGATATGAAC GGTCTGCTGG CAGTGCGGCG CTGCGGCGTT
CCGGCGACGA TTGTGCTGCT CAATAACGAC GGTGGCGGCA TTTTTCATCG TCTGCCGATC
AATCGGTTTG AGCCGGAATT CACCGACTAT TTCGTGACGC CGCACGGACT GGACTTTGCA
CACGCGGCGA AGATGTACGG TCTGGAGTAT GTTCCGGTAA AGGATCGCAC AGCGTTCCGT
AGCGCCTTCC GTGCCAGCAT CGACGCGCGC GCCGCAACAC TCATCGAACT CCGCACGGAC
GCGCGCACCG ATCTGGTGCG GAGAAACGCC CTGATCCAGG CAGCCAGGGC GACAGGCGCC
TGA
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| Protein sequence | MPNRNILYAT TLVDELARAG LRHVCLAPGS RNTPLVLAFA RHPAIRVFSH LDERSAAFFA
LGLALATDTP AAVVCTSGSA AANFFPAIVE AHQAGVPLLA LTADRPHELR DSGANQTIDQ
VKMFGSFARW SVDVALPEAM PPPVALRNLR TLAARAMAIA GGEPRGVVHL NLPFRPPLEP
TPMPGDLTEP PAAAQPRDDG APYTCFLRSA PPAPPEAVIE PIAAVLEQHE RGLIVCGPRC
PGGAFGALVS ELSQRTGYPA LVDGVSGVRF GYPGVIGGYE TFLFGEHAFP PPEVVLRFGA
VLTSKWLNQY LDTAASPVVI HVRASGVWAD DSHRVSHFVV ADEAAFIRAL IPRLTERQSA
WRQRFVEAEA RVWAAVEAGI ADEPYFDGGA VYDVIDLLPE GASLFVGNSL PVRHLDQFGK
PGVRHICAFA NRGASGIDGN ISTALGIGAG RPDAPLAAIV GDITFYHDMN GLLAVRRCGV
PATIVLLNND GGGIFHRLPI NRFEPEFTDY FVTPHGLDFA HAAKMYGLEY VPVKDRTAFR
SAFRASIDAR AATLIELRTD ARTDLVRRNA LIQAARATGA
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