| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4190 |
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| Symbol | |
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| ID | 5541701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5421648 |
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| End bp | 5422310 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640896300 |
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| Product | FliA/WhiG family RNA polymerase sigma 28 subunit |
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| Protein accession | YP_001434238 |
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| Protein GI | 156744109 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000210037 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGGTTG ATGGTATGGA ACAGAAACGT TCGTGGCATG AAGTGGTGCA GGAGTGTCAG
GATCGCGTGT CCCGTCTACG CGTAGTGCTG ACGACAGGCG GCGCGATGCC GCCTGAACAT
AAGGCAGACC TCGACGCGGT GATCCTTGCG GTGCGCAACT GGATCTATGG GCGGGCGCGC
CGGTTGGGGC TTGATGAAGA TGCCCGCAAC GATGTGCTGC TCGAATTCAT TCAGCAACTC
CATCGCGATC TGCGCAGCCC TGGATTTGGC AGCATGGAGC GCAGATTCGG CGCATATGTC
TCGACCACGG TCAACCGCAT TCTCTACGAA AGAAAAAATC GGCAGCAGAA CATCTTATCT
TTTATTGAGA GCCTGGACGC GCCGTTTGGC GACGACGGTC CGCCGCTCCA CGAGGTCATC
GAAGATCCGA CGCCGGCGCG TCTTGCCGAA GAGCATGACG AAGAACAGGT TCGCAAACGA
TTGTACGAAG CGATCGCAGC GCTTCCTGAA ATCGAACGTG CGGTTGTTAC GCATCGCCTG
AGCGAAGTAC GCGGGATCGA CATCGCACAG ATGCTTGGCA TGTCGCCCGC AAATGTTTCA
CGTATCTACA AGCGCGCAAT CAATCGGTTG CGTCAGGCAT TGACTGCCGG GGAATCATCA
TGA
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| Protein sequence | MAVDGMEQKR SWHEVVQECQ DRVSRLRVVL TTGGAMPPEH KADLDAVILA VRNWIYGRAR
RLGLDEDARN DVLLEFIQQL HRDLRSPGFG SMERRFGAYV STTVNRILYE RKNRQQNILS
FIESLDAPFG DDGPPLHEVI EDPTPARLAE EHDEEQVRKR LYEAIAALPE IERAVVTHRL
SEVRGIDIAQ MLGMSPANVS RIYKRAINRL RQALTAGESS
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